BtaINT0050539 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18846381-18849272:-
Coord C1 exon
chr25:18849130-18849272
Coord A exon
chr25:18846586-18849129
Coord C2 exon
chr25:18846381-18846585
Length
2544 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTTCTCCTTTGTTCTTGCAGATT
3' ss Score
12.85
Exon sequences
Seq C1 exon
GAAGTGGTTGAGGATCTGGCCCAGGACATACTCTCCAAGCTTCCCAATGAATTTGACTTGGAGTTGGTCATGAAGTTGTACCCTGTGGTCTATGAAGAATCCATGAACACTGTCTTAAGGCAAGAGCTCATCAGATTCAACAG
Seq A exon
GTGGGCTATATGGTCTTACTTGGATCCTGGGAGTTAGAGTGTGAGGGGAAGGATCTAATAGGCAGTGACTAGAAAGGACACTTGATAAAGGTTGCTGTGCAGAGTTGGTATGCCCTACCTGCAGGAAGGCCAATAAATAGGGGCATCCCAGCATGTGTTGGTCCAGGGTTAAATCATTCCTTCTATTCATTTGCTCTTATTCATTCACGTGACATCTGTTAAGTGGGGTTAAAACCAAAAGGCTAATGGTGAACATAATCATTAAAGCCACTTTTATTGAGCCTTTATTACCAGATATGGCTCCAAGTACCACTCAAGCCTTTGCATTCAAATCACACAATAGTCTTATGTCCATTGGCTCCTCAACCAAGCACATACACCACATGTCTGAACCTGCGACCACAGACTCCAAATGCTGCTGTCTCCGTTTTTGCTCAATGGTCATTGCATAAAGGGATAGCCCTGACTCTGAAAGACAAGGGAACTGGAAGAATTTCATCTAAGAATTGATTAGCCCCTTAGTTTTAGTGTTACTCTCTAGAGTCAGTAGTCAGTTGGCCATATGGGTAACCAAGCAAAATACAGAGTGTGAGTTAAGGTTGCTGACTGAGTCAATACCTTGGTATGATAGGATGCAGTCCTCATTCATCCAGACACGAGGCCAATGACTTTCCTTCTTTGCCATTCATTTGCCCCTAAGCTCATTGGAGCTCTTGGTGATTACAGTCACCTTCACTAGCCTTTGGGATTTCTTAGTAGCTCAGTTGGTAAAAAATCCACCTGCAATGCAGGAGACCCCGCTTCAATTCCTGGGTCAGGAAGATCCACTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGCAGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCTTGGAGAAGGGAACAGGCTACCCACTCCAATATTCCGGCCTGGAGAATTCCATGGACTGTGCTGTCCATAGGGTTGCAAAGACTCAGACACAACTGAGTGACTTTCACTAGTCTTTACCACTGGCCATTATAATGTAAGAGAAGAGTGTAACAGCACTTATATTTCAGTGCTGCTCAGGATTAATTACATTGGGCAATACTGCAACATACCTTCTCATTACCCTCTTTTTTTTTTTTTTTTTTGCCTATTCACCTAGTGGTATGAGAAGCCCAGAATGACAGTTCAGCTTCCAGTTCAGGGGAACCATTATTGCGCCTTCTAGGGCAAACTTTCCTCCTTGAGTACTAAAAATCTTGAAACTAGCAGAGCTCATAGTTGCAAGAATAGAAATAGAACTTTTGCAAGTAGCTCTTTAGGTTTAATAGAGGTCTGTGGTATAATCCCTCAGAGCGTAGTTTTGCTCTTAACTCCTCAGCCAAGTATATACACCAATAACGTGTTTGAACCTTAAATTCCTCTTAATATAAATTAATGGTTACACATTCAGGAATCTGTTTCTTGGGTTTAAGCATTCTCATATCCATTTGGCTAGGATTCCATAAATCTTTGGACATGACAAGCTCTCTCTGGTAGCAGATTCATTGGCACTCTCAGGTCCCCCTGGACTTGGTGAGTCCCCACAATAGAGGCCAGAGACAAAGGCAGATGATCTTAGAATATTTTAGGCTGCCCCTTCAGCTACCTTTTCTCAGGTAGGCATGAACCTCATAGTCTATAAAAAGAATTTTGTTTTTAAAACAAAGAAGCCTTAAAACTGCATTACCCTTTGACCCAGAAGTTCTACTTTTACTAAGAATATCATTATAAGTCTCTGCAAAGTTTGCTATAGATGGATGTCCCTGCTGCTGCTAAGTTGCTTCAGTCGTGTCCAACTCTGTGCGACCCCATAGATGGAAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACATTGGAGTGGGTTGCCATTTCCTTCTTCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCCAACTCTTTGCGACCCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGAGTTTCCAGGCAAGAGTACTGGAGTAGGTGGCCATTGCCTTCTAGTAATGTTATTTACAGTAACAACAATCTAGAAATAATATGCTTCAGCAAGAGGAATAATTAGATAAAATGGAACACCTTGCAGTCATTAGAAAGTATGATTTTAGGTAGGCCTCTATTGAATAGGAAAGATGTTCCCTTTATGCTAAGAGAGAAAAACAGATTACATATATATATATATAATCCCATTAAAAATAATTTGTGTTTACATATAGGAAAATCTAGAAAGACATACATCAGAGTTATCTTTAGGTGGTAAGATAATGGGGTGATTTAATTTTTTCTCATCTTTACAATTCTGCTCTCATGAATGTATATTATATGACTTTTTAAAGGAAGGAAAAGTAAAAGGAGACTTGGAGTCAGTGCACTTGGGGTAGAATGAGGTCAATGGAGAGGCAGGCTGAGTCTTCTCCTTTGTTCTTGCAG
Seq C2 exon
ATTGACAGAAGTGGTTCACAGAAGCCTCATCGATCTTGGCCGAGCAATTAAAGGGCAGGTTCTGATGTCCTCAGAGCTGGAGGATGTCTTCAGTAGCATGCTTGTGGGTAAAGTGCCAGCCATGTGGATGGCAAAGTCCTACCCATCACTGAAGCCCCTGGGAGGCTATGTGGCTGACCTGCTAGCCCGCCTGGCCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]