RnoINT0000698 @ rn6
Intron Retention
Gene
ENSRNOG00000054843 | AABR07005593.1
Description
NA
Coordinates
chr1:189693267-189695630:-
Coord C1 exon
chr1:189695488-189695630
Coord A exon
chr1:189693472-189695487
Coord C2 exon
chr1:189693267-189693471
Length
2016 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGCTTCTTTATCCTTACAGGCT
3' ss Score
10.07
Exon sequences
Seq C1 exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAAAGACTTTAACCTGGAAGAGGTCATGAAGTTGTACCCTGTGGTCTATGAGGAGTCTATGAATACCGTCCTAAGGCAGGAGCTCATCAGATTCAACAG
Seq A exon
GTGGGCCTGATGATATTGCTTGGATTTTGAAAGTTGGAACCTGTGGGGAGTACTTAAAAGGGACACTCGATAAGATATTGCTATGCAGAGAAAGTTGTTTGCCCTGCACAAGGGGAGAATTGTAAAATGGAGTGACCCTAGTGTGTTGACCAAATATTAAATCATTCCCATTCCTCTCTCCTTCAGCTAAATAGCAGAAGTAGTCATCAAAGCATTTTTGAAGGAGCCACTAGTGTCAGATATGACTCCAGACACTATAGTTCTCATTAGAACCAGACATAATAAGTGTGATATGACATTACTAATTTCTACCACTACTTTACAGATGAAAAATTCAGCAAAATGAGCTAAGTACTCATTCATCTAGATCTAGCTCTCATGTCTTCCCCTCTAACAGTTGGAACTTTTCCTTGATGGCTACCAAGATCTTCAGTGGCCTTTATCAGTGGTTGTTTCCATACCAGAGAAGAGGGCAACAAATCCTCACTGTCAATATGAGTCTACCATCCTTCCACATTTCTGGTTTCTGTCCATCCATCCATAGCAGGGGAAGTCCCAAATGGTTAGGTACCAGTTTAGCTTCTGATTCAGGGGTCTGTGACTGTGTCTTCTGGGGCAAGAATTCCTTAGGTACCAAAACCTTGAAAGTGGTCATCGTTGCAAGAACAGAACAAGATAACAAGAAAGCTGTAATTAGGTGTAATAGAGATCTGGGATGCTATCCCCAGGCAACAGCTTTGCCTCCCAACTCCTTAGCAAGCATTCCTCCTGCAATGAATTTTTGAATTTGCTCATATTCTTGCCCGATTGGTTGAGATTTTACAAGTTCTTTCTGGTGGCAGGTTTTTGGGGTGAGGGGCACACTCTGTCAACTCTTCTGGGCTGAGGCATGCCTCAGAATAGAGAGGTCAGAAAGAGGAAGGTAGTCTTGCTGGCTTGTAGATTGCCCTTCCTCAGGTATATACCTCATAGTCTGTAAAAAGAACAACTTTGGCAATGCCGATCAAAAGTCCTAAACCATAGGCACTCATTGATCAAAAACATATTAGTAAGAAAGTAATTTGAAATTTACACAAAGCAAATATAGATTTTTTTCTAGCAATGTTGTTTAACTACCTACAAATAATCCTTTCTTCCTTCTTTCCTTCCTTCCTTCCCTCCTTCCTTTCTTCCTTCCTTCCAACATGATCTTACTATGTAGCCCTGGTTGTCTGAAACTACATAGACCTTGAGTTCACAGAGATCCACTTGGCTCTGCTTCCTGAGTCCTGGGATTAAAAGTGTGTGTCACCATGTCCAGCTTAAAAAAATAATATTTCAATGGTAGGGAAATAGTTGGATAAAATAGAATGCTGCATAGTCATTATAAAGGACAATTTGGGGGCTAGGGAAATAGCTCAAGGGTAAAGTACTTTCAATGCCAGCATGGGGACCTATGTTTAGATTCCCAGTACCCACAGAAAGTTAGGTCTGGTGGTGGACACCAGCAACCCCAGCCCAGGGGAGCAGAAAACCGCTATGTTCAATGATCAGTCTAGGCAATCAATGAGCTCTGGGCTTAGTGAAAGACTCTGTCTCACGACAATAAGGTAAAGAGTCACCAAAGTCAACCTCTGGCTTCTATATATGCATGCATACTTACATGAACGTGTGCAACACATACACACAAAACAGCAACAGCACAATTTGGAACTGGGCTGTAGAGCATATGCCTGCAATTCTAGCACTTGAGAGCCTGTGGCAGGGACTCATCAAATTGGAAAGATTTCACAATGTGCTAAGAAAGATAGATTACAAAAAGGCAAAATGGAATGACGTTATTAAAAACAAGGTTGTGTTTCTAAAGAAAACAAAGATACACATCAAAGTTATTTTTAGGTGGCAATGTTACAGGTGATTGAATTTCTTCTAACATTGACCTCTGAAGAGGGAGAAAGATAAAAGGAACACATTTGGTGTACTTGGGAGGAAGGAACCCCTGCAAAGCCAGGCTCAGCTGCTTCTTTATCCTTACAG
Seq C2 exon
GCTGACCAAAGTGGTTCGCAGAAGCCTTATTGATCTTGGCCGAGCCATCAAAGGGCAAGTCCTAATGTCCTCAGAGCTGGAGGAAGTCTTCAATAGTATGATCGTGGGTAAAGTGCCAGCCATGTGGGCAGCCAAGTCCTACCCATCACTGAAGCCCCTGGGGGGCTACGTGGCTGACCTATTGGCCCGCCTGGCCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054843:ENSRNOT00000080401:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]