BtaINT0050583 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59416850-59419503:+
Coord C1 exon
chr20:59416850-59417091
Coord A exon
chr20:59417092-59419326
Coord C2 exon
chr20:59419327-59419503
Length
2235 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ATTCATCTGAACACTAACAGGGT
3' ss Score
3.17
Exon sequences
Seq C1 exon
GGGAGCATATCTGGATAGTTCTTGATGGTCCAGTAGATGCCATCTGGATTGAAAATCTGAATTCCGTTTTGGATGATAACAAAACACTAACCCTTGCCAATGGCGATCGGATTCCCATGGCTCCAAACTGCAAGATTGTTTTTGAACCTCATAACATTGACAACGCTTCGCCTGCTACCGTCTCAAGAAATGGGATGGTTTTCATGAGTTCTTCTATCCTTGATTGGAGCCCTATTCTTGAG
Seq A exon
GTATGATTGGAATCTTTTTTGGTGTAATTAAAGAGGGAAATAGGTCCTTGAGCCTTCCTTTAGAGTGCGCACTGATTTTCCTGCAGACTTCCTGGTGTAATTGCATTTTAATGCTGATGTTTATGGGAGATCCTTGAATGCTCTTGCGACCTTCAGCCCTGGTTGTCCCTTAAAGATTTCTTCAGTGCTCAGGGTTCTTCAGCTCGGGTTGAGGAATCATTGCAAGGCCTAGGTGAATCAATAATCCTACCACACTGTAAATGAATAAGGAAAATTTAAGCAACCGTCTTAGAATATTAACTTGAAGGAGACAATTTATTAAAATTGTATATAAAGAATTTTTACGAGACTCAATAGTAATAATGTTAGTTTTAAGTTTGCACCTGGAAATAATATTTCAGATAATCTCTGTTTAATTCCTGATAAGGTATATTATTTTATTACTACCAGTATATGTTAGATATATTGATTATGGTAAGATTGTAATTGAATGCCTTGCATACTTATATATTTTACTAAATAAATGCCATAACATAAGGCAGAATGCTTACTAAATGAGCCATTAGTACAATCTTTTTTGACACAGTTGGTCAAATTATTATTTTCATTTGAATAAGTTTTTTGGAGATAATTTTGATTTAAAACTTATGAATACATCTTTTAAATTAGGGGATTATAAAGAAAAGTAATTCTGATGTACAGTTGGATATGTCATTAAAAATACTTCTGAAAATTTCAGATTTCACAATTAAATTATCCATCCTTCAAGGAAAATTTAGAACACGAGTTCTCAACTCTGGCTTTGTAAGAATAATCACCAATGGCATTTCTTTAAAATACAGATAACTGTGTCACATCTCAATCTATCAAATTAGAATCTCTGGGGAGAGAGGTGTTCTAAATGTTTTTTAAAAAGTACCACAGTGGATTCAGGCTTGGTGACCAGGTATACAGCAAACTCCAAGTGAAAATGAATTTGTGATTTTCTCCCAAATACTTCAAATTTACAAAGGTTTTAGAAAATATTTTTACATAATTAGCTAATGAATATTTATAGTTTGCTATTTATGAAATGAGTTTCTATTATATTCTGTCCATGTTGAGGGTGAATAAGACTTTTATATTAATGCTAATTTGCTTACAAATGGTTAGCAAGAAGCAGGACTCATAAATCTCTGACTGGAAATGTTTAGAGGAGGGCAGGGCAGCTCTGAAAGAGTCATTGGAGGGCTGACAATGGAGAAGTTGTGATCATGAGACTCCATGAACCTCTGTGAGTCATGCTGATTACTTGGCTCTGTGTATATTTTCTGCTTCCATCAACTTGAAAGTGCTGTTTTGTTTTTGTCATTGTGCAATCATGTTGAATCCATGAAATTATGGATAACTGAGAATTGCTGTTTTATTGCTTCTGTTCAGAGTCTCTAAGAATGACCTGATTTCTTGATGCCAAGGGAAATTTCCTCATCTGAAGAAAATATTGTTGTGTGTTAAATGGTATTTTGTTCTGAATCACATGCAATTTTCTAATACTGGCTTTCCAACATGACTAAATTCTCCATTTTCCTGAGTATTCTTTGATATTTTTCCTACATTGGTTATTAATTAGATTAGAAGAAGTAAAATTATGATATATCTTTGTCTCCCATTTTGAATAATCTGAGAATGGATTTCCTTTGTTTATCTTTTATTCTTCTTTCTTTTTCTAAATTATTTCCATGTATATGTCTCCTCATTTTCTCCGAGCATATTTTAACCAAGAGTGTAAGACTTTTCCTTTTATCTTGACTTCAAGACCTGAGCTTAGGTGTAGTGTAGCTGAACTTACAGATGCTAGAATCAGACTCTGGACCAGTTTTTTTCCAAATGAATTGGACTTCCCAGGTGGCTCATTGGTAAAGAATCCACCTGTAACGCAGTGGGTTTGATCCCTGGGTTGGGGATGGCCTTGACACCTACAAGCTATGGGATCCTGGGCATGTTACTTAAACTTCTTGGGCCTTAGTTTCCTCATCTGTAGAAGAATAATAACCATCCCTATCTCATAGAATTTTTTTGACATTAAATGAGGTCACACATGAAAGAATTTTATCAAGGCCTGGTACATTACAAGTGCAATATAATCATTAGGTATTATTATTGTTAATTGATATTAAAAAACTCTTGTACCTCAACTGGATTATTTTTCTGGTGTGCCAATAAATTTAATGAATGCATTCATCTGAACACTAACAG
Seq C2 exon
GGTTTTCTTAAAAAACGTTTGCCTCAAGAAGCTGAAATTCTTCGTCAGCTGTACACCAAGTCATTTCCAGACCTGTATCGCTTCAGTATTCAGAACTTAGAGCATCAGATGGAGATGCTGGAGGCCTTTGTGGTCCTGCAAAGCATCAACATGCTCCAGGGCCTCATCCCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(46.0=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]