MmuINT0050928 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28273190-28275668:+
Coord C1 exon
chr15:28273190-28273431
Coord A exon
chr15:28273432-28275491
Coord C2 exon
chr15:28275492-28275668
Length
2060 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ACGGGTGTGTGAACCCACAGGGT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GGGAACATATCTGGATTGTTCTTGATGGTCCAGTTGATGCCATCTGGATTGAAAATCTGAATTCTGTGCTGGATGATAATAAAACCCTGACTCTGGCCAATGGCGACCGGATCCCCATGGCTCCAAACTGCAAGATTGTTTTTGAACCTCATAACATTGACAATGCTTCTCCCGCCACCGTCTCAAGAAATGGGATGGTTTTCATGAGTTCCTCAGTCCTCGACTGGAGTCCTATTCTTGAG
Seq A exon
GTATGATTGAGTCCTTTCTTCTGTATAATTATAAAGGGAAGGCATCCTTAGTATTCTTTGTAGGCATGATGATTCTTCTGCAGCTGGTGATGGAATGGCTTTTTATCCTACTGTTTCTGAAAGGCCCTTGTATGTGCGGGGCTGCTCAGACCCTTATTGCCCTTCATAGGCTTCTCCAGTCTCCTTCTAGTCACTTAGAACTGTGATTTCCAGGTAATTGTCAGGCCGACATGAATCAATAATCCTGCCAAACTGTGTCTGAGGATTGAAAGTAAAATTTAATATCACCACTTTTGGGATTCATGACCGTTTTGAAAGGTACTTGTTCACATAAAATCTGGGAACAACCATCCTAGAATTTTAACTTAAAGACGATTTTTTAAACTTGCATATAAAGACCTTTTTTTTTTAATGATATTCAGTTGTCATAATATTAATTTTTAACTTTGTGCTTAGAAATAATATTTTACATAATGTCATATCAATTCATGACCAGGTATAGTAGCTTACTACTGTCAATATATTATAGAATATATTAATTAGAATTTCATTATAGTTGCATACCTTGCTTGCTTATATGTTTTATTAAATCTGTACTAGAAGATAAGTGTGTTACTGGATAATTAATCCATGTGATTTTTATGACATAGATGGATAGATTTAAAATTTTTATTTGCCTTTATATTTTGAAGATGATTTTATTTTAAAACTTTCTAATTTAAATTATATGTAGGTATTATTTTATATTTCCACTATATTTTTATACTCCTATCTGTATAGGAATATTGTAACTTTTATTAACGTCTTTTCAAAAGTTACATGAATCTGGTCTACTAAAGGGTTTTAGACTTAATAACATTTATGGAGAGATACAAAAGAACATGGTTTCTAGCAAAATGATACTGACACCCTTGAATATGATGCTAAAATGTCTTTTACAGATGTCATATTGCATAGTTAGTTTTTCGATTCATTAAAAATGAAGTATAGGTGCTCTTGGATATTCAAAAGTACTCATCAGTGATAATTTAACAAAATACAGGTGATTGTGTCAGATTGGAATCCTACCAAGTTAGAATCTCCAGGGAGGAGACCAAGGACTCTTTATATGCTTAAAGTATTACAGTAGATTTTCTTTATATAACTGTGCTTGGTGAGCACAGGTACAACAGGACCCAAGTCAATTGTAACTACATGATTTCCCCCCAATTATTTAAATTTTATAAAGTTGTTTGAAGAATACTTTTATTGTATTAAGTTAAAAATATTTAGCTTGCTCCTTAATTTTTTTAAGATTTATTTATTTATTATATGTTAGTACACTGTAGCTGTCTTCAGACACCCCAAAAGAGGGCATCAGATCTCATTATGAGATGGTTGTGAGCCACCACGTGGTTGCTGGGATTTGAACTCATGACCTTCAGAAAAGTAGTCGGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCTAGCTTGCTCCTTATAAAGTGCACTTTTATTATACCCTATCTGGATTTTTATAGTAATCTTATACCTAATCACATTTTCACATGCATTTAAGTAATGTCGTATCTTCAGGGGATCAGTAGCCTGCTGTAAGATTCTGTCTCCTAATGTCAGAAGCTGCACCATAAAGTCTCACCAACTGACCGTGAGATGAACTAAGACAGCCATAACGGACAGTCCATAGTGGAGGGGGAAGACCACTAGGCTGACACAGGATGACATTGGACCAGCACACGTGAATGATGTAGACAGACTCTTTGACTGTTAATTCTGGTCTTGTCACTTACCAACTGTGGTACGCTGGGTGGCTTACTGAAGACATAAGTGTCAAAGGGGGATAATAACAGTTCCTATCTCAGAGAGTTGCTTTGAAGGTTTGAATAAATTATTATACAAAAGAGTTTATAGCCAGGCTTGATGGCATCTTAAGCACAATATTACTTTGTGTCATTATTAATTGTTAGTGTTAATTAATTAGTAATGCTGTGAAAATGTTTTTATGCCCCAATGGTTATTTTCCTGGTTTCACCAATGCACGGGTGTGTGAACCCACAG
Seq C2 exon
GGTTTTCTCAAGAGACGGTCTCCTCAAGAGGCTGAAATCCTTCGACAGCTGTATGCAGAGACTTTCCCGGACCTGTATCGGTTCAGCATCCAGAACCTGGAGTTCAAGATGGAGGTACTGGAAGCCTTTGTGATCACACAGAGCACCCACATGCTGCAAGGCCTGATCCCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(46.0=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: