BtaINT0050598 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59470154-59470893:+
Coord C1 exon
chr20:59470154-59470268
Coord A exon
chr20:59470269-59470716
Coord C2 exon
chr20:59470717-59470893
Length
448 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TTGGTTTTATATTGAATTAGGTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
AATGAATACTGGGTTGGAAAAGCTAAAAGAAGCTTCGGAGTCTGTTGCAGCTCTGAGCAGAGAACTGGAAGTGAAAGAAAAGGAGCTCCAAGTGGCCAATGATAAAGCCGACATG
Seq A exon
GTGGGTAGACATTGACACATGGACCATATTCGTTTTGAATTCCCAATTCATAAATGTTCTCTAAGTAGTAACCATGGAAGTGCAAATTTTTTATTTCCATTATAATACCATATATACACCAGGGATGCTATGAATGAAATAGGTAACTAATGAGAACCTACTATATAGCACAGGAAACTCAGTGTTCTATGATGACCAAATGGGAAAGAAATCCAAAAAAACCGGGATGTATGTATGCATACGGCTGATTCACTTTGCTGTACAGGAGAAACTAATGCAACATTGTAAAGCAACTATACTCCAATAAAATTTTAAAAAGTACCATACTCTTAATTCTGTGTATGAAAAATTGTGTAAGTGGACAAAATCGACAAATCCAGGCAAAAATGTGCATTTTGAGCTGGGTGATTTTTGATGTACTTTTTTTTTTGGTTTTATATTGAATTAG
Seq C2 exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAAGCTGAGGTCCAGAAGGTGAAGGACAAAGCCCAGGCCATTGTCGACAGCATCTCTAAAGATAAAGCCATTGCTGAGGAAAAACTGGAAGCAGCAAAGCCAGCATTAGAAGAAGCAGAAGCAGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.9=100)
A:
NA
C2:
PF127772=MT=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATACTGGGTTGGAAAAGCT
R:
GCAAGGCTGCTTCTGCTTCTT
Band lengths:
288-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]