GgaINT0093197 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78581928-78582501:+
Coord C1 exon
chr2:78581928-78582048
Coord A exon
chr2:78582049-78582324
Coord C2 exon
chr2:78582325-78582501
Length
276 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTTGTGAATTTTCTCTTTAGGTA
3' ss Score
10.74
Exon sequences
Seq C1 exon
CACCAGAGTTAATAATGGGCTGGAAAAGTTGAAAGAGGCCTCTGAGTCAGTGGCTTCTCTAAGCAAAGAGCTTGAGATAAAAGAAAAGGAACTTCAGATTGCCAATGAAAAAGCTGACATG
Seq A exon
GTAGGTACAGACATTAAAGTATATTGCACTTAATTTTTTTAATTTTTTTTTTTTTTTTTGTGTGTATGTGTAAAAGGAAGTTAGGCTGTGGGAAAAGAAGTGATAATAGAAGCTTAAAAAAGTGACAGCAAAACCCATCTTTTTTTTTTTTTTTTTTTTTTTTTAAACATTCTGGTTCTGGAAATTGAATTCAACAGATCAAATGTTACAATGAAAATATAGATTCTTCCAGTGAGGTATTTTCTTTAATATGTTGTTTGTGAATTTTCTCTTTAG
Seq C2 exon
GTATTGAAGGAAGTTACTGTAAAAGCACAGGCTGCTGAGAAGGTGAAGGCTGAAGTTCAGAAAGTGAAAGACAAAGCCCAAGCTATTGTGGACAGCATCTCAGTTGATAAAGCCATTGCTGAAGAAAAGTTAGAAGCTGCTAAGCCTGCTTTGGAAGAGGCGGAAGCAGCCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(11.2=95.1)
A:
NA
C2:
PF127772=MT=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGAGTTAATAATGGGCTGGA
R:
TAAGGCTGCTTCCGCCTCTTC
Band lengths:
295-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]