BtaINT0050616 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59531466-59533828:+
Coord C1 exon
chr20:59531466-59531671
Coord A exon
chr20:59531672-59533624
Coord C2 exon
chr20:59533625-59533828
Length
1953 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CATTCTGTAACTTTTCCCAGGGT
3' ss Score
7.05
Exon sequences
Seq C1 exon
GGGTGAGCCAGGACCTGCTGGATGTGAGCGCTGTGGCCCAGTGGAAGCCCATGCTGTATGCCGTGGCTTTCCTGCACTCAGTGGTCCAGGAGAGGCGCAAGTTCGGGCCCCTGGGTTGGAACATCCCCTACGAATTTAACCAAGCCGATTTTAATGCCACAGTGCAGTTCATCCAGAACCACTTAGATGACATGGATCTCAAAAAG
Seq A exon
GTACCTTGGGCACACTACTTTCTGCCTTGGGTGACTTGGGGCTTGAATCCTTGAGCTAACATGAGCTCCCCCCACCACCCCCAGCATGGGCTAAATCCTGTAAGAGCGATGATTTTCTGTGCTGGCAAAGTCATCCTCTTTAAGGCATAGCAACTTGGGTCACAATAACCTCTTAATTTCAGGGAAAAAATGAACACATTTTGATGATCTTTTTATTTCTCCAAGGCAAATTGACATTACAAGTAAGACAACCTAACAGGATCTATTGGAGGGAGGGAGCAATGGATGAAGAAGCTTGTTTTTTAAAATCCTAAAACGAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGTGAAGAGCTGACTCATTGGAAAAGATCCTGATGCTGGGAAAGATTGAGGGCAGGAGAAGGGGACGACAGAAGATGAGATGGTTGGATGGCATCACCGACTCGATGGACATGGGTTTGGGTGGACTTCTGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGTGGTTCATGGGGTCGCAAAGAGTCGGACATGACTGAGCGACTGAACTGAACTGAAAACACAAAAAATTTAGGGTCTAGATGACTTTTTATTTTATTTTATTTTTAAACTTTACAATATTGTATTGGTTTTTGCCAAATATTGAAATGAATCCACCACAGGTATACATGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCGTCATAGTGCACCAGCCCCAAGCATCCAGTATCATGCATCGAACCTGGACTGGCAACTCGTTTCATACATGATATTATACATGTTGCAATGTCATTCTCCCAAATCTTCCCCAAAATTGAAATATAATTGGTTTAAAATGTTGTGTTAGTTTCTGCAGTACAATGGAGTGAATCAGCCATGTACATAAATATATCCCCTCTCTCTTATACCTTTCTCCCACCCCACTCTGATCCTACTCCTCTAGGTCATCACAGAGCACCGAGCTGAGCTCCTTGTGCTATTCACCAGCTTTGCACTAGCTCTCTATTTTATATGTTGTAGTGTATGTATGAGGCTTCCCTTGTGGCTCACATGATAGTCTGCCTGCAATGCAGGAGATCCGGGTTAAGTTCCTGGGTCGGGAAGATCCCCTGGAGGAGGGCATGGCAATCCACTCCAGTATTCTTGCCTGGAGGATCCCCATAGACAGAGAAGCCTGGTGGGCTACAGTCCATGGGGTAGCATAGAGTTGGGCACGACTGAGTGACTAACACACACACAGTGGATATATGTCAATCCCAATTTCCCAATTTTCCCACCCTTCCATTCCCCCACTATGTCTGCATGCCCATTCTTTATGTCTGCATCTCTATTCCTGCCTTGGAAAAAGGTTCATCTGTACCATTTTTCTAGAGTCCACATACATGTCTTAACATATGATATCTGTTTTTCTGGCTTATTTCACTCTGTATGACAGACTCTAGATCCACCCACATCTCTACAGATGACCTTATTTTGTTCCTTTTAGTGGCTGAGTAAATTCCATTGTGCATACATACTGCTTCTTTATCCACATACTCTTGAATGTGTGCTTTTTAAGGAATAGCCTCAATATTCTTAAAAAATAAGCATTTTTTCTATTGAAATCAAAGTGAAGAAGTACATGAATGCACCACCAAGAGAATCTATTTCAAATCATGAACATGAGCTTTGAGTTCCCCTCATGTTTGCCTATTTAATTTTCTTTCTGCACTTTTTAATTACTGAGGAGTGAATGAAGAATGCACGAGTGGATGACATTGATGACAATGACTGACAATGCATACATAGGTGTTACCTGGTAGGGAAAATGGGGGTGAGACAGTCATCACTTCTGCCTCATCATTCTGTAACTTTTCCCAG
Seq C2 exon
GGTGTCTCCTGGACCACTGTCCGCTACATGATAGGAGAGATACAGTATGGAGGCAGAGTCACCGATGACTATGACAAGAGACTATTGAACACACTTGCTAAAGTTTGGTTCAGTGAAAATATGTTTGGACCAGATTTCAGCTTTTACCAAGGCTACAATATTCCAAAATGCAGCACAGTTGATAACTATCTTCAGTATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCTGTATGCCGTGG
R:
ATCAACTGTGCTGCATTTTGGA
Band lengths:
342-2295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]