DreINT0058116 @ danRer10
Intron Retention
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9353058-9355274:+
Coord C1 exon
chr16:9353058-9353263
Coord A exon
chr16:9353264-9355070
Coord C2 exon
chr16:9355071-9355274
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GAATGGGTTTTTTTTTACAGGGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTATCAGTCAGGATCTTCTGGATGTGAGTAACATGGTCCAGTGGAGGCCAATGTTGTATGGTGTGGCATTCCTCCATTCCACTGTCCAAGAGAGGCGGAAATATGGACCTCTTGGTTGGAACATCCCATATGAGTTCAACCAGGCAGACTTCAATGCAACTATACAGTTTGTCCAAAATCATCTGGATGATATAGATATCAAGAAG
Seq A exon
GTGAGAGTTGCATTATGGACCAGTTATTTATTATTATTAAAATTAGAAGTAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTAGTAGTATACCTCCCAGTGATAGTTTGCAGCTGAAAGGGCATCCGCTGCGTAAAATAAATGCTGGATAAGTTTGCGGTTCATTCCACTGTGGTGACCCCAGTTTAATAAAGGGACTTAGCCGAAAAGAAAATAAATTAATGAGTAATAGTAGCAGTAGCAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTGGTAGTGGTAGTAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGAAAGGATTATTTAATCTGTGCTGGGATTTAACATAACTTCTGCAATAATATACCACTTCAATCATTCTGCATTAACACTAAATATGAAGATACAGACCAGAAACAAATCAAATGATTTGCCAGTGCAGAAGGATAATTATACTTTAAGACTTCTAGAAATTAGACAAATCAAGCTTTAGGTAAAAAAAGAAATATCAAATGAAGTATTAGAATCCTTATTGCAAGCAGTTTATTTAGTTTAATTATCTTAAAACTTGCTTGTTAATAGATTTCTACTGTATGATTTTATTATTTTGTGTGGGTTAATAAACAGGATAATTCTTCTTAATTTAATAATTGTCCTTAAATGAGCCAAAGCATTTTTACTTAAAATATAATGCAGAATTTTACTTGTTGTGTCCCAAAATAAACAAAATCTTTTCGCAACACAACATACTGAATGCATTTTGTCCCTTAATAACACTTTTAAGTTTGATTGAGCAGTTTTTTTAACAGGCAAACTTAAAACAAGTTACTACAGCTAAACTAAAGTTCTAAAATATGCTACAGGTAAGTAATTACACTAAATCTGCAATCAAAATGTCTAACTTTAAGCTTAACTAAGAACAAAGATCTTAAAACAATTAATAGTAATCATACAATCTGATTTTGCATAGAGTTTTATTCTTAAAAGGGACCTATTATGCAAAAATCCCTTTTATAAGGAGTTTAAACACAGCTCTGTGGCAAAAGTCTGTGAATGTAACCAGCCTCTATTACCACAAATTAATTATTTACATTTTTATAATCACTCTTCATAGAAACAGTCTGCAGAAACATATTGACATTTTTCCTTTGTATATGCCATCAAAGGGGGTAAAGCCCGGCCCATTAGGACGTTAGTCTTGTTTTTGAATCACTATGCTGACATAGGCATTTGTAGCTCCGCCCTTTTTTGAAAAGAGGGCTGGGTAACAATCTCATTTAAATTTAAAGCTACAGTCACCAAAATGTTGTAAATCCTTTTTTATTTATTGTTATTTTATTATTATCTGTGAGGTATTTTGTGCTAAAACTTCACTTGCATACTCTAGGGACTCATCAGAGTCTCATCAGAGAATTATTTTACAAATTGTAAAAAGGAGCATAATAGATAGAAGGGGCATAATAGAATGTTTGTGCAAGCAATAAGACTTTAGTTCTTGACTAGATAAGGAATCAACCCAGGACTTGGCAATCAAATGAATTCCACTCAAATGTTCTTGCACTGCTTGTGATGAAAGTATGACAATAATATCTGCTTTTTCCACCATTGTGTCAAGGTTGCATTACAAAAATTGAATGATCTATGGCAGCTTTGTCAAGGGTCTATGCAAAACGCTGTCAAATCTATCTGACATTTATATTTGAATGGGTTTTTTTTTACAG
Seq C2 exon
GGTGTGTCCTGGAACACTGTACGATATATGATCGGTGAGATCCAGTATGGGGGTAGAGTGACCGATGACTATGACAAGCGCCTCTTGAACACATTTGCAAAGGTGTGGTTCAGTGAGAACATGTTCAGCCCTGATTTTCACTTCTACAAAGGCTACAGCATTCCTAAATGCAGTAATGTGGACCAGTACCTCCAATACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373:ENSDART00000149818:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGGCATTCCTCCATTCC
R:
TGTATTGGAGGTACTGGTCCACA
Band lengths:
346-2153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]