BtaINT0050628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84965809-84972027:-
Coord C1 exon
chr2:84971848-84972027
Coord A exon
chr2:84966082-84971847
Coord C2 exon
chr2:84965809-84966081
Length
5766 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTTTTTATCCTTTTGTTTAGGAA
3' ss Score
9.13
Exon sequences
Seq C1 exon
GATTCTGTTAGGGCCTTTGAACATCCAGGTTTTGTCATGAGGCTGATTCTTGATAACGACACCATTAAGTTTGAACCTGATTTCAATGATTATACAGACATCCTTCTAAATGTTTATGATGTCATGATTAAGGCTGTAAATTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAATGG
Seq A exon
GTAAGTAGCAACGATATTCTGATTGCTTGAATTTGCATGACAGTATTTCCTTCAAATAACTTCTAGAAGGTGTAGACTGGTATCCTCCACTTAACAGAACATAAATGACTTAATCACATTGGCTTATAATGCAGTTTTGCTTGAAAACATACTATTTTCCCATTAGCTTCTTTTTAATACCGGTTTCTTAGAACAGTCTTTCATTGAACTCAGCTGAAAACTTTCTGAGGGGGAAGAATTAAAGTTGTGATCAGGTCTGGCCTCCCTTCTCTCTTTGGCCAAATATTTAGCAACATTCTGCTGAACTACAATATTTCAACAGTAGTTATTGCAATCTAGTATATGAAATGAGCATGTCTGAAAATTCATTTACTTAAAAGCTTTTCAAGTTTCCTAAGTCCAACCGTTAGCTTTCTTTTTCCTTTTTTATTTTTTAAATAGTTTATAAGTATTTCATGCATAAAAAGAGTACAGGACTCTTTAAAGTTTTAAGGCTAATGTTTAAAGTTTTAAGTAGTAATAAAGTCAACACCTTCATGCCTTCAATCTGACTCATACAATGACTGTGACCTTTAAACTCTGCCCTTCAGTTGTCCTTCCCTGTTCTTAGTTCTGTTCTTCTACCTTCTAGCAAAGGATTCACTATCTTTCATTTTATAGTTATTATTCTGAATTTTTAAAGATAAACTTACTATCAATACACAGCTGCATATTACATTTCTTTCTAGTTTTTCCATATTGTTGTATAGATGGAGTCATCTTATAAATAGTCCATGACTTGTTTTATTTTACTTAACATTGTGATTGTGACATTATTCATTTTGAGAATATTATTGTCTCCATAGATATAACTTTTATTTTTGCTTTCTCAGGGCCCATTAACTTTTTTTTTTCAAATAAGCCTGATCATTTTTGATAGTCTCTTGTACTTGGTTATATATTCATTACTCTTCTCTGTTTGCTGATCTGAGTCCTGCTCCTGGTGGTTTATTTCTGTAAGTGCCTTTCCTTTATTACTGTGGCCTTGTACAAGTGAGAACTTTATGCAGGACGTCTTTGAGGCCTTGATTTGAATTGGTTCCTCTGGAATTTACATATTGATACGTGCTCTTGAGGCCCCTGCAAACCCAGTACCCTTTTAAACAAAACTTTTGCCTGAGGATTTGGTGGACAATACTGATAGTATGAACATTTACCCAAATCTGTATGAGAACAGGTCTGTGGCTACAAATTCTTAAGACAACCACTCTTTTTCTTCTCCACTGAAAAACAAGGCCCAGATAAGACATTTTCTCTTTATTGCCCCCTCAACTTGCAGCATTCTGAAATTTTATGTCCCGAGAACCTGCATTTTGAGGTTGTGTCACCTCTCAATGTTCCTGGTTTTTTGTAGGGATACCAGTTATGACTTCCCACCTTACTTATTTTATGATGAATATTATTAAGATTCACATTGTTGTTGTTCAGTCACTGAGTCATGTCCAATTCTTTGTGACCCCATGGACTGAGTACACCAGGCTTGCCTGTCCTTCACTATCTACTGGAATTGCTCAAACTCATGTCCATCGTGAGTCAGTGATGCTATCCAATGATCTCATCCTCTGTTGCCACCTTCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAGTGAACCAGCTCTTTGCATTAAGTGGCCAAAGTATTGGAGCTTCAGCTTTAGCATCAGTTCTTCCAGTGAATATTCAGGACTGATTTCCTTTAGGACTGACTGGTTTGACCTCCTTGCAATCCAAGGGGCTCTCAAGAGTCTTCCTCAGCACCACAGTTCAAAAGCATCAATTCTCTGGCATTCAGCTTTCTTTAGGGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTATAGGGACCTTTGTCAGTAAAGTCTGTGCTTTTTAATACACTCTCTAGGTTTATCATAGCTTTTCTTCTCAGGAGCAAGCATCTTTTAATTTCATGGCTACAGTCAGTGTCCACAGTGGTTTTGGAGCCCAAGAAAATAAAATCTGTCACAGTTTCCACTTTTTTCCCCATCTACTTGCCATGAAATCCTGGTACCAGATACTGTGATCTTCATTTTTTGAATATTGAGTTTTATGCCAGTTTTTTCACTCTCCTTTTTCACCTTCATCAAGAGACTCTTCAGTTCCACTTCACTTTCGGCCATTAGAGTGGTATCATATGCATATATAAAGTTGTTGATATTTCTCCTGGGCAATCTTTATTCCAGCTTGTGATTCATCCAGCCTGGCATTTTGAATGCTATGCTATGCTATGCTATGCTAAGTCACTTCAGTCGTGTCTGACTCTGTGCGACCCCATAGATGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTAGCGACCCCATGGATTGCGGCTCCTCCGTCCATGGGATTTTCCAAGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGTCGAATGATATACTATGCATATAAGTTAAATAAGCAAGGGGACAATGTACAGCCTTGTTGTACTCCTTTCCCAATTTTGAACCAGTCCATTCATTGTTCCATGTCTGGTTCTAACTGTTGCTTCTTGACATATAAGTTTCTCAGGAGACAGGTAAGGTGGTCTGGTATTCCCATCTCTTTAAGAATTTTCCACAGTTTGTTGTGATCCACATAGCCAATGGCTTTCATGTAGTCAATGAAGCAGAATTAGATGTTTTTCTGGAATTCCCTTGGTTTCTCTGTGATCCAATGGATGTTGGCTACTTAAGCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGTTTATCTGGAAGTTCTTGGATCATGCACTATGGAAGCATAGCTTGAAGGATTTTGAGCATTACCTTGCTAGCCTGTGAAATGAGTGCAATTGTACGGTAGTTTGAACATTCTTTGGCATTGCCTTTTTTTGGAATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGCATTTTCCAAATTTGCTGGCATATTGAGTGTAGCATTTTAACAGTATCATCTTTTAGGATTTGAAATAGCTCAGCTGGAATTCCATCTCCTCCACTAGCTTTGTTTATAGTAATGCTTCCTAAGGCCCACTTGACTTCACATTCTAGGATGTTTGGCTGTAGGTGAGTAACCACACCATTGTGGTTATCCGGGTTGTTAAGACCTTTTTTGTATATTTCTTCTGTGTATTCTTACCACCTCTTCTTAATCTCTTCTGCTTCTGTTAGTTCCTTGTCATTTCTGTCCTTTACTGTGCCCATCTTTGCATGAAATGTTCTCTTGGTATCTCCAATTTTCTTGGAGAGATCTCCAAGTCTTTTCCATTCTATTGTTCGCCTCTATTTTTTTGCATTTTTCACTTAGAATGTTTTATCTCTTCTTGCTATTCTCAGGAATTCTGCATTCAGTTGAGTGTATCTTTCCCTTTTTCTTTTACCTCTTGTATCTCTTCTTTCCTCAGCTATATGTAAGGTCTCCTCAGACTACCACTTTGCCTTCTTGCATTTCTTTTTCTTCAGACTAGTTTTGGTCACAACCTCCTGTACAGTGTTACGAACCTCCACCCACAGTTCTTCAGGCACTCTGTCTACCAGATCTAATCCCTTGAATCTATTCATCATCTCCACTGTATAATCATAAGGGATTTGATTTAGATCATACCTGAATGGCCCAATGGTTTCCCTACTTTCTTCAATTTAATCCTGAATTTTGTAATAAGGAGCTCATGATCTGAGCCACAGTAAGCTCCTGGTCTTTTTGTTGTTGTTGACTGTATACAGCTTCTCCATCTTCAGATTGATTGTATTCTTTGCAGTCGATTTCATTGTTGATCATCTGATGATGTCCATGTGCAGAGTAGTCTTTTGTGTTGTTGGAAAAGGGTGTTTGATATGACAGTGTGTTCTCTTGACAAAGCTCCCTTAGCCTTTGCCCTGCTTCATTTTGTACTCCATGGCCAAACTTGCCTGTTACTCCAGGAATCTCTTGATTTTCTCCTTTTGCATTCAATTCCCTATGATGAAAACGATATCCATTTTGGTGTTAGTTCTCGAATGACTTGTAGGTCTTCATAGATCCATTTAAGTTCAGCTTCTTCAGCATTAGTGGTTGGGGCATAGATTTGGATTTTTATGATTTTGAATGGTTTGCCTTGGAAACCAATCAAGATTATTCTGTAGTTTTTGAGATTGCACCAGAGTACTGCATTTTGGATTATTTTTTTGAGTATGAGGGCTCCTCCATTTCTTCTAAAAGACTCTTGTCCATGGTAGTAAATATAATGGAATCAGTAAACTAAAATGGACAAGCTTCACATTAGACCCAACAATTTCACATAAATTTTGCATATGCATATCACACATTGCATAAATTTTACAATATGTATTTATTTATCCTAAAGTTCTTTTTCAGAAAGGATGACACCAAACATCTATTGTGCCCCAAGAGTAGGGTTGAGATGATGGTGAAGGTGGTGGGATTCACTAATATTCTCATGAAGCATCTAGTTCTTAAAAAGTGTGATTTCTTGAAATGCCCACTAGGGGACATAGTGGGCAAACGCACCCTGGATACCTGACCAAATTACCCAGTTCGCTGAGGAATCCTTTGATATTATCAGTTTAAAAGCTGTAGGATATTCACTACTGGCAATGATTTTTGTTTGTGATAGTTAAACATCCCTTCTCTGGAAAACAGGCAAAGAGAGAGAGAGAGAGAGACAGTGTGTGTATTTAAAGTATATCTTGGTTCAAGATAATAAACCATATTTGCACATTTACTTGTCTGTAGAGATTTGTTTGCTTATTTAAAATTGTTGTGTGATAGTTTGTCCATGTTATTCTAATGGTTGTAGCAGAATGCAAATTTTGCAACTAGGGATTTTAGTCTGTTCTAGTTGCTGTTCACAGAATCAAAACTCAGGGTCGAATCAATGAGTAAACAGTCTTTCTTTGTTCCAGATAGATTACTCCTCAAGGTGACTAACTATTGTGACCAAAGACTATAATCAAATGACATTGAACTGACTTATTTAAAGAAAAAAATAATGTACAATGCAAACACTACCTTTTAAGCTAGCATATACAGTTGCACAAATAAAATGTGAATTTTGCTGTTTTGATATTCTAAATCTTAATCTGTGCATGTTCTCAAGTGACTGCTCTTTGACCCATACAGAAAAACAAAATACACCTAGATAGCCTCTAAGAAAAACAAAACATTATATGAAACCTAGGTATTTAAAATATGCTGTGATTAGACTGAATTTCCTTCTGTAGACATAGATTAGAAAAATCAGAGTACCTTGAGAGTAAAAAGACAATCTGCTAAGATGGGCATTTTTATATAGCTAAATGATATGGTGTGCTTACTTTGTGGCTCAGCCCTCAAGAATTCGCCTGCAATGCAGGAGATGTGTCTTTGATCTCTGTGCCAGAGAGATCCCCTGGAGTAGGGAATGGCTACTCACTCTAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGTGGCAGGCTACAGTCCATGGTCTTGCAAAAGAGATGGACATGGCTTAAGTGACTAAACAGCACAATACAAATGATATGGTTACCTTAATTTAAGGTATTTTAAATGACTCATATGGTTTTTATCCTTTTGTTTAG
Seq C2 exon
GAAAGTAAGTCTAAACCAACAATCTTGAAGCCAATAATTCTGAATGAAATTGTCGAAGCTCATAAAGAAAAGATTAAGGAGGTGGTTGTGCGTGAGAGCGTGGCACCCATTGAGCACCTCAGATTTTATGACAAGTATAATTTTTTAATTACCAGAAAAGCTGAGCAAGATGCTGATGCTTTCCTTGCAGAAAATCATCATTATGAGAAAATAATACAAGAAATTCGCAAATACCAAAAACTCATAGAGGATATACAGTACACATCTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]