GgaINT1011562 @ galGal4
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9263951-9265774:-
Coord C1 exon
chr7:9265595-9265774
Coord A exon
chr7:9264227-9265594
Coord C2 exon
chr7:9263951-9264226
Length
1368 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTCTCTATTTTTTTCCAAAGCCA
3' ss Score
7.03
Exon sequences
Seq C1 exon
AAGTCAGTTCGAGCCTACGAACACCCAGGTTTCATCCTGAGGGCAACACTTGTGAACGACTGTATTAAATTTGAACCTGACTTTAATGACTATGAGGATGTATTACTGAATGTCTATGCTGTTATGATTAATGCTGTCAGTGATATACCAAGAGTTGAGACCAAATTATTTTCTAAGTTG
Seq A exon
GTAAGAAATTACAATACTCATGGTTTTAGTTTTCTCATTATTTCTACGTTTAATTCCCGAGTACTGTAATGAATAGTCCTAACGTCAGACCTCACAGTAATACAGTAATATGCTGTGGTGTTATTTTGAACTTTCTGAAGTCATCTTTTTTTTATTAAAAGACCCAGGTACTGTTCACTAAGCAAATAAAAGGCCATCAGCTATTTTCCTCTGTGCTATTTTCTACAGTAGCTACTGCAAATGTATTATATACTACAAACAAAATTGATGCATTCAAATTTTAAATATGTTTCTGCAGAATTCTGAAAAAAGGCCTTTATTTTGACACTGGAAAAGATACTGTCATCTTAAACATAGAATCTTTTGAATAGATGGTCCTTTAAAAAATCTCAACTGTAATTTTAAAGCAGTTTCTATTTTGCCAGAAACTTGAATAGCTGTACTACTATTTATAAAAACTCTAATCGATAACCTTTAAAAAGACAAATAAAAAGAAGCATCTCAAGCATGTCTAAATGCACAAGAGCAAGGTTTCATAGAATCATAGAATCACCAAGGTTGGAAAAGACCCACAGGATCACCCAGTCCAACCATCCACCCATCACTAACAGTTCTTATTAAACCATGTCCCTCAACACAACGTCCAAACATTCCCTGAATTCCTCCAGGGTTGGTGACTCCACCACCTCCCTGGGCAGCCCATTCCGGTGCCTGACCACTCTTTCAGAGTAGTATTTCCTAACGTCCAGCCTGAACCCTGGTGCAGCTTGAAGCCATTCCCTCTAAGTGCTATCACTAGTTACATGAGAGAAAAGGCCGAACCCCAGCTCACTACTACTTCCCTTCAGGTAGTTATAGAGAGCAATAAGGTCTCCCCCAAGCCTCCTCTTCTCAAGACTGAGTTTCATAGCATCTGGGGGGTTGCAGGAAAGTGCTTTCCATGTTTCTAATGTTACAGAGCCATTGGCAGATAGCAAAATTGAAATTGTGCTGGTCATTCAGGAAAAATAAAGACAGTGTAGACTAAAATTATTGATGAGTTTATTTGGAATGGACTCTTATTTAGAATTCTGAATTCCCAAATGAAGAGCTCTTATTCTTCACTTGCTGGAGATAAACTTCCATAACTTAGGATTCAAAAAATTTGGTAGTTATATGTAAATAATTGTGTATTAAAAAAAAAAGAAGATTTGGAATCAAACTTTAATTAAAGAAAATTGAAGTAGTATTTAACTGATTTTTTTTTCTATCCTGTTAATCTTCCGTAGTATAACTGATCTACAGAAGTAAGTGTAATTTGAAAATGTGGTGTCCTTCTGATTGTTATTTATTTATTCATTTATCCTATTTCTCTATTTTTTTCCAAAG
Seq C2 exon
CCAAAAGGCGAGTCCCCATCAGCTGTCTTGAAACCTGTAATCCTTGATGAGATCTTGGATGAACATAAGAGAATGATCAGAGAAGAAATTATCAAAGAAAGCGCTGCACCCATGGAACATGTCAAGGTTTATGATAAGTACAGCTTCCTGATAAACAAGCAAGCGGAACAAGATACTGATCGGTTCCTGACTGAGGAGCATACTTTTGAAGAAATGAAAGGGGATATTATAAAGTATCAGAAACTCAGTGAGGAATTAAAATATAATTCTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGAACACCCAGGTTTC
R:
ACCGATCAGTATCTTGTTCCGC
Band lengths:
352-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]