RnoINT0049088 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60325361-60329356:-
Coord C1 exon
chr9:60329177-60329356
Coord A exon
chr9:60325634-60329176
Coord C2 exon
chr9:60325361-60325633
Length
3543 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CATTTTCCTCCTCTGCTCAGGAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAATCAATTAGAGCTTTTGAGCATCCAGGTTTCATCATGAGGCTGGTTCTTGATAAAAAGGCCGTTAAATTTGAACCTGAATTTACTGACTACATAGATATCCTTGTAAATGTTTATGAAATCATGATTAAGGCTGTCAGCTTTGTGCCAAGAGTTGAGACGAAATTGTATTCCAAGTGG
Seq A exon
GTAAGTAGCAAGGACATTCTGATTGCCACCCTGGAAGCTCACCACCATCACACCTTAAATCCCATCTTAGCCTCTTTTAGAAGCATCACTAGCCTGGGTTTTGGAGTGACTATTTTTAATTTTTATATTAAAAAAGAGACATAATAGGGTTTTGTATATTTCTAAATGATTTCTTTTTATATGTATATGTGTGTATCTTATATGTAATTCATGACTTGGTTTCGTGCTAGTTAATTTTACATCAACTTGACACAAGCTAGAGTCCTCTGAGAGAAGGGAGTCCCAACTGAGAAAATACCTCCATAATATCAGTCTGTAGGGCATTTTTGTAATTAGTGATTGATGGTGACACCTTTGGCCTGATGGTCCTGGGATCTGTAAAAAAGCAGACTGAGCAAGCCACAGGGAGCAAGCCAGTGAACAGCACCGCTCTATTTCTTCTGCCTCAGCTCCTGCCTCTAAGTTCCTATCCTCTTCAGTTCCTGCCTTGATGTCCTTCGATGTGGAAGTACAAACAAAATAAACCCTTTTTTCCTTTTTTGCTTCTGGTCATGGTGTTACATCACAGCAATAGAAGTCTTAGCTGGACAAGTTTAGATTGCTTAACATTTTGATTATGAAAATATGCATTGGCTATTCTTTTCTGAGAGACAGAAAGGAAGTGGATCTGGATGGGAAAGGAAGTATGGAGGGACTGGGAAGAGTCAAGAAAAAAGGAAACTATGTTCAAATTATATTGTATGAGAAAAGAATCTGTGTTTAATAACAGGGAGAAAGAATAAAAAAATAAATTATGCATTGGGAGGACAATCCCCTTCAGTGGTTCCAATTTTTTTTACTTTATTTTCTTGGAATTTTATTATTTTTCATGCAAAAGAAGTTGGACACTTTTGATGGCCCTTTCTACTTATTCATTAGGTTTTTTGTTTTTACATATACTAATTCTTTTCCATTGTGAATTTAGAATTTACTAATTCTAAATTTCCATTCAGAATTCTACTGTGTGTGGTTCTGCTGATGGTAGAACCCTGCCCATGGTGGCTAATACTTCTGGAGTCTTTCCCTTTTCACTATGGGACAGACATAGGACCTCAGGACATCTCCATGGCTGCTGCCTAGGTTGACTTCTCTGGAATTTGGTAATCATTTGAAAGCTCTGGAAGGCTTAGCTTTGACTGAATAATTTTTGACTTAATGATATTTTGGACACACTAGTTGTATGCTTATCCAAATTGGAGACAAGAATTCTGATAGTGGACTGTTAAGGCTACTATTTCTCTCTCTCTTAGACAAATTCCTCAGTCCCCCTCACCCCACCAAAGGTTCTGTCTCCTTTAAGTTTTGTCAAGATATGTGTCCTGAGAGTGCTACTTTGCTCTACTTTGATACTTTGTCTTCTGACAGTCACACTCAGCCACCCGTCCCCTCCTTGCTGTGGAGTCAGCAAATCTTTGACCACAAAGACGATTGAAGTCTATAAGCTCATGTAAGCACACAATGGCCTTTTTAAATTTGTTTTTCCCATCTTGACTCCATAGATGACCCCCCCAACTTTGATTCCTCACCATACATTAGAAGAACCAAATTTAGTAATTTTCTTTCATATTCACGTATTCTAAAATAGTTCTGTGTATCAGTTCTTCATATCACCACATTTCAGAGTCTGTCAAAAATCACTGCTTGCTTTGTCTGTGCATAACCCCAATTCATTTATCATATTTATTCCTAATACTTTACCTTTTTTTCAAGAACAGAAAATATCAAGGTAGCTTATGAAACACACTGATAGAGGCAGTTAATAAGATAAGAATTACCAAGCTCCAAGTACTGATTAGAATTGTGCAAATGAACTTTATTGCTATGATTTTATGGTTATAAAAGACGACTCTACTCTTCCTGGTGTCTACAGTAAAGAGTAGATGCAATGAGTTTAAATTAGTATGAAAATATGTAATCTAGACTTTCAAGAAAAGAATACTTGTTTTGAGTCAGAGCTAGGGCTTGCATGGGACATTGTCTATGGGGTAATGGTTTTGTCAACCTTACTTGGTCACATTTTAAAAATAAAAATTAGGGAGTTCATCATGATCACCACCCCTAGATGTCTCTAGGTGATTTGAGGTTCAGCCAGATTTTGAAATATATTATAAGACTAGTTTGAATAAAATAATTACATAGCGTCTCATTGACCTTTGGCAGTAAATGCAGAAGCAGATTCATATTTCTGATCATTATTATATTTGATAGGAGGAGAATATAGATTAAAATACACTTTTATTTCCCATGGAAGGCAAACTGGTAAGGGCTGCTGTACCGTGAGTCCAAGCTCATAACTGTCTCATGGTCTAATTTGATATTCTTTGAACACCTGAGGTATCACATAAAATATCATTTTTCTTAACTCTCAATGGGCACTAATTAAATTTAATATTAGAAACTTTCTAAGGTGATTCTTAGTCTGAAAATCTAATTATGTCTAGAAAGATAGCTCTATTTTAGAAATTAGACAAGCTGCTAAAAATGTAAGAAACTGTCTATGAATAGTATTAATGACCTTCACATGAGAACTCATAAATCCACAGTCCATTGTGTGGAGTGTAGTATTTTAAAAGCTGTTTTGTAAAAGAGACAATACCAAGTGTCTACTGAGCCCCATAATGAGGGGCTGATGGAGGGGGTAACATTCAGTAGTGTTCCTATAAGGGATCTAGCTTTAAGACAGCTGAGTTTCTGAAGTGCCCAGCAGGAGTAGCAGGCGACCACTCACTGGGTACCTAAGGTGATGAGATCAATGTCAGTGTCAAAGAATACTCACCACAGACTGCGATTTCTATTCATTACAGGTTTGAAATGCCTTCTTCTAGATGGCTGAGCACTGATGTTTGTAGAAGTTACCTTGCAGATTATAAGCTGTGCCAATGCATTTATTCATCCTCTTACTTACAAGTGGAAGGAGTCCTTTGACTTTCATCTGCTCATCTAAAACTGTTGTCTTGTGCATTCTTGCTCATGTTATTCTAGCCATGGCAGCAGAATAGGAATTTGGCAACTAAGGACCAGCATCAAAGGCCACCTGAGGAGCGGGAGTGGCAGTGTTTCTTTGGTTTCCTTCTCCACAGAGAGAACAGACTCTGTGTTTGAGGAGGGTGGTGGTGGGACTCTGCTCCAGCATGTGCAGGCCAAAGCCAGCCTAGGAAAGCTAGCACAGTGGTATGTGGGCTCTTCTGTTTGGTGGCCTAGGTTTTATTTTGCATGTATTTTCAAATGACCACTTGCCCAACTGTACTGAAAAACAAAACCAAAACAAACCAACAAAACGAATCACCAGCTAGCCCTTATGGAAAACAATTACACAAAGCCTACAGTTTACAACACTCTTCAGGTTAGACTGAGCACATTTCTATAGATTTGAGATTAGAACATTTCAACAGCTTATGTATAGAAAGGGCAATATAGTAAGATTGACACTTTCAGGGAGATAATATAGTGGGGTTAATTTAGCTGAAGGTACATGAAATAACATCATTTTCCTCCTCTGCTCAG
Seq C2 exon
GAAAGCAAATCCAAGCCAACCACCTTGAAGCCCATAATTCTGGATGAAATTATAGATGCTCATAAAGAAAAGATTAGGGAGGTGGTTTTACGAGAGAGTGTGGCGCCAACAGAGCACCTCAAAATGTATGACAAATATCAGTTCTTGATTACTAGACAAGCTGAGCAAGATATTGAAGAGTTCCTGACTCAAAGTCAGAACTATGAGAGACTAATAGAGGAAATTCGCAAATACCAAAAGCTGGGAGAAGAAATACAGTACACATCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102454=MRP-S22=WD(100=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]