BtaINT0050688 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84983512-84985492:-
Coord C1 exon
chr2:84985417-84985492
Coord A exon
chr2:84983638-84985416
Coord C2 exon
chr2:84983512-84983637
Length
1779 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
3' ss Seq
AATATTTTCTCTGTTTTCAGGAT
3' ss Score
11.02
Exon sequences
Seq C1 exon
TTGATTTTGTTTTGAAAGATCCTAGAGAAAAGGAAGATGACAAAAAGGTAGAAGAACTTCCACCCCATCGTGCTGA
Seq A exon
GTAAGGAATCAATTTTCTCTAAGAATATTGACTTTGTGATCATCTCTGTGTATGTGGATATCTTTATACACTGGTTATATTTTCTCATATATATGTTTATATGTGTACTTCATTTATACAAGTGGTTGTATTATCTTTATGTATTTAAGCCCTAATATGTTATGTCTGGGCTTCCCAGGTGGCTCAGTGGTAAAGAATCTACCTGCCAATGCAGGAGACAGGGGTTCCATCCCTGGGTCATGAAGATCCTATGGAGGAGGAAATGGCCACCCACTCCAGTATTCATGCCTGAAAAATCCTATGGACAGAGGAACCTGGCGGGCCATAGTTCATGGGGTTGTAAAGAGTCAGACATGACTAAACACAAACACATTATGTTTACAAATTGTTGGATAAATGGATAGACAAGCAGACGTACTGACAGATGAATGCCTATGTGGTTAAAATATAAGTATGCTGGTGAAAGAACTTGATACAGACATTTGTATTTGCACAGCTCCAAGCATGGGCTTCAGATATGATGCAGACATGAAAGCTTGATGGCATTTTGAATGCCTCAAAGCACATTGGGAATGTTACAGAAAATATGCAAATATAGAACATATTTCATTTGATTACATGGATTAAAATATAGAATGCCCATAATACGAAAATTCACTTGCTATATATTTTCCCTAAAATAATTAGTGTTTTTAGGAATACATTTCTTAAATAGTTTCAATAGAACTTATGTGATTAAGTAAGCACTTCAATTTTGCTTTGTTTCTTTTATATCATTTAAAATTGCCCCAAATTGTTTATCTTAACAACTAAAAACAGAGTCAATATATTTTCTATGGAGAATATTTTTCTCCCAGGTATAGACAAAAATTATCCTTTGTAATTGTAAAGGTGGTATGGCCACAAATGACAAACTGAATTAAACTTACTATATATTACAACTAGACTAAGTGTTTAAAATTAATGAGTAAAAAAAATTACAGGCACAGAATATAAATGTTTAAATACACTCTGAAAGATGAAGATGGCCCATCTTTAATATATAAAAGATGATTATTCAAGTTGGAGGAGTTACAAAATATTATTATTAAACCCTCTATCATTCGTGTCTGACTCTTTACGACTCCATGAACTACAGCCTGTCAAGCTCCTCTGTCTATAGAATTGTCTAAGCAAGAATACTGCAATGGGTTATCATTTCCTTCTCCAAGGGTTCTTCCCGACCCAGTGGTCGAACCCTGGTCTCCTGCATTGCAGGCAGATTCTTTACCATCCAGCCATCAGTTACAGAATACATGTCTTTAAATAGAATGTTAGTGTTCCTGATTTTGTAATGACCTTTAAGTCAGAGGTGAAATTTAAGGAGATTTCCAGGCTAGACTATATTCTTAAAATGTTTTAAAACCGATAGGGGTATAAAATGTTTAAATGTTTCCTTTTAAAAAAGTCTTTGAAGATGTACATAAAACATAGCTGGCTATTCTTTTCTGCTTAATTACTGTTAGTTATTTGTGGACTCCATCAGATCAATCATTTAGGGAAAAAATGTCCTTATATAATAAAAATTCAAATCTAATTTTATATGCATTAGAAAGTATACTAAACCATAATGAGTATGACCTTTATATACTTTAAAGCGTAATTATATAACATGTTTTATTATTACCATGAGGGATCGTTTAAATTAAACTCAAAAAAGTATTACTCAAAAAGTATTTTGAATATTAGAATATTTTTTGATTTTTAAAGAAGATAATTAAATATTTTCTCTGTTTTCAG
Seq C2 exon
GATGGAAATTCTTCCAAAGCCTTGGAGGAAATCATTTTTAGCTGCAAGCACTTATATTCGGGATCACTTGAATGCAATGAACCCTACAATGTTGTCGGTGCTAGATTTGTGGCACAGTACTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTGAAAGATCCTAGAGAAAAGG
R:
AGTACTGTGCCACAAATCTAGCA
Band lengths:
190-1969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]