MmuINT0051109 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:46166110-46173139:+
Coord C1 exon
chr1:46166110-46166185
Coord A exon
chr1:46166186-46173013
Coord C2 exon
chr1:46173014-46173139
Length
6828 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCTTTTCTTTTTTTTTTCAGAAT
3' ss Score
11.88
Exon sequences
Seq C1 exon
TTGACTTTGTTTTAAAAGATCCCAGAAAAAAAGACGATGATGGCAAGATAACTGAACTCCCACCTCACCGTGCTGA
Seq A exon
GTAAGTGAGCATGTGTACTAATGGCATTCACTCTTTATGACCAATGATATATAACTACTGCCAGATTTAAAAAAGATCCCCTCATGTTTGCATTTCCTCATATGTTCATGTATTTCTCATATATGTGTTTTGATTTATATATTTCTATATTACATATTTATAAATATATTACCTATATTTTTATTTATTTTATTTAAATATATATTTCCTCATAAATGCATAAATTGCTCTTTATTACAGAACTAACAGAGTTTAAGTGATTAATTTTGAAGGAATTACTTTTCTCATATATATATAAGTATATACACACACACTTACACATGGTATATATAGAGTTTTCTCATAAGTGAATCTGAGAGTCCCTGTCTCAAAACAAAACTATACCAACTAACCAAACAACCAAATTAAAAATCTTGTTTTGAGCCAGGCAGTGGTGGCATACACCTTTAGTCATGGGACTCAGGAGGCAGAGGCAGGCAGATCTCTGTGAGTTCAAGACTAGCTTGGTCTACAGAGCAAGTTCCAGGAAAGTTGGGGCTACACAGAGAAACCCTGTCTCAGGAAAACACCAAAAGTCAAACAAACAAAAACTTACTCAACAAATGCACAAGACGCAACTCTTGTGGAAATGATTTGCTATGGCCTTGTATCTCCTTAGCATGTAGATCAGGCTTCAGATAGTGAAATATGAACATTTGGTGACAGTTTGTAAAAAATAAATATTTCCGCAACATTGAAAAAGACCAAATATATCCATAGAATATTTCAATTTATTTATGGACTCAGAACATATGGTAAAACACAGCACTTATTGTACGTTTTCCTTAAAAAGTAGTATTTAGGAATACAGCACTTAAATATTTGAAAAGTAAAACATAGATTAAAATAATTTTAATTTCTTGACAATAGCACAGGCTTTATATGGTAAAATTCCTAGTTAAGCATGAGACGCTGTCATCATGCTGAGGCTGGGCTGCTTATGGAGTAGAGATGGAAGCAGGGAAAGCGATAGAAACATTTCCTTCTGTTTAACTGAGGTCTGCTGTTCTGAGAGCTGATACCATGGAAAGGGAAAAAACTTAGGATGGGCAAACTGTAACTGTCAATAGAGGAGGAAAGTGAAAAAAAAGTAATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTGTGTGTGTGTATGTATTCTATACACACACAGACACACACACACACACACACACACACACACACACACACACGCACGCATGCAAGCACCCCCCACACACACACGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATGTCCTTCAATTTGGTGTGGAGGTGCATTAGGAAGAGAGTGAGAAAGCCAGAGTTCCTGAGGCAGCACATGGAAAAAGAGGCAGACCCTGGAAAATGTCAGGGCAGCTTTAGGGATTCTGCTAAGGTAAAAACTACGAGAAGGAAAATATACTACCTCATTGTCTTAGGGTTGCCTTTGCTGTGAAGAGACATCATGACCAAGACATACCTTATAAAGGCAACATTTAATTGGGGCTGGCTTATGGGTTCAGAGGTTCAGAGTCCATTATCATCATGGTGGAAGCATGGCAGTGCCCAGACAGGCATGGTGAAGGACAACCTGAGAGTTCTACATATCCATCCAAAGAAAACTAGGAGCAGACTGTTTCTAGGCGGCTAGGAAAAAAGGTCTCAACGTCCGTGTCCACAATGACACACTTACTCCAAAAGGGCTACACTTAGTCCAACAAGGCCATACTTCCCAATAGTGCCACTCCCTGGGCCAAGCATTTTCAAACCACCGTACTCACCAAAGGGCTAATTACTTTCCCCCCTTTTTAGTATGGTTTAAGGTGAGCCTGCCTTCCTAGAGGAAATTCCACTTTCTTGTGGAGTGGTTCTTTGGTGGAGTGATTGACTGTCCAATTGTGGCTCAGTCTGAACTCAATCACCCATAGTATGTTGTTGTCAGATTAAGGAAATAAACAAACACATTTCTCCTTAGTCTCATTTAATCAAGAGGGAGCCCAGATTTGAATTTTCTATTCTACTCTTCCTTTGTATTTTTTTCTGTTGTTGTTGTTCTGTCTTTCTACTATATGAGTGTGAACCTGTGTCTGTCTGAATATTGTCTTATGATTCTGAGTGTCCCTGTCTCTTTGTCTCTGTGTGTATCCCTGTGAGCTTGTCCCTAATAAAGGGCTTCCTGAATGTTGTCTTGTGAATCTCTCTCCCTCTCCATCCCCTCTCTCATTGCTGTGTGTGTCCCAAATAAAGGGCTTTTTCCCTTTTCTTTTATTAAACCATACAGAAACCATCTCATGGGGAAAGAATGAGGGATATTTACAGGAACCTTTGTAAGGCTACTTTTTCCTCCTATTTTTACTAAATTATCATCATAATGCAAATACAAGCATGTGCATTACTCCCAGAAGAGTATGTGATTTAAGATTACATCTATGTATTAATTTAGATTGTAAAAGTTAATTACATAAGAAATCTAAGGTTTGTTTTTACATTGTGTACTTAAAAGCATTTTAAACAAATAGATTGAGCACACAGTAGGATAGCAGTCTTAAATTTAAGTGACCTTAAGGTGCATTATTATTAAGGTGCATTATTATTTCTGACTGTGAGGCCCCGCAAATGTAAGAGTTTTTGTTTTGTTTTGTTGTTTTTTTTCTTAGTCAAAATGTGTTGCCACACAACTGAATTGACCCATTTATGCTTTTGTAACTTGGTTGTCAGCTTGGCATACTCACCCAGAGAAGTGACCCCACCTAACAGGCAGTACAGAGCCCTGTCAAGGCCACTGTACTATTCTCCCATTTGAATAGGTGGTCATAAACTCATTGAGGAACCAGATGAAGGATCACACACTGCCTCAAGTTTTTAGCATTTCTCACCTCTAACCATGGACTTTATTTATTTATTTATTTATTTATTTATTTATTCAATTTATTTATTTATTTAATTTATTTATTTATGTTTAAGGCCAAAGACTATAATAAAATCCAGTCATTAAACTGCCTGTCTCATTTCTGTCTCCTGTCCTCATCTTCTTTCTGCTCCAGAGGTAACACTAACTGCCAGTTAGGGAGCTGGACAATGGAATCTGATTTCTCTTTGTTACGTGGGGTCATCATGTGTGGCACTTGGGCTACCAGTGGGCCTATCTAGGAGACTTGGGTATTATATTAGTGGTTATATTTATGCAACAACCAGATGTAGGGGAAAGAGGAAGTCTTGACTGCCTAAATCAAGTGTTAAATAAAATTGATGATAAAATTATGGCCATAAAGTGAACATATTCAAGTATACAGAAGCTTGAAAATACTATAAATCAAACATGAATTTGATATATCTGACCATGGAGTACCACAGCTTAGTGGCACAGTGTGCTACAGATTAATTCATGGGTATCTTGCCAACTGCACAGTGGGCTACCCCACAGTGCACTGCCTAGCATCTTCAAAGCCAGCTCAGGATAAAATCAAAATCCAAATGTGTTGCTTTTCTAGGATCATAGAGCCAGAAATCTCAGAAGTCCTAATAAAGATATACCACAGAGGATATCTTACATATTTGAAAACATGTAAATATATTTGAAAATATGTTTTCAAATAAGAATGGTTTTGTGTGTTTGTGTGTGTGCACACGCTTGCACTGCGTGATTTGTAAATGATTTGGCTTTAACTGTCAATTTGAAAATTTAGAATCACCAAGATGAGAGTTCTAATAAAGAACTATCTATATAAGGTTGTATTATAAGTATATCAGTGGAGAATTGTCTTGGTTGTTCATGTATAGAAGAAAACTTAGCCCATTTTTGGTGACACCATTCTCTACATTGGGTTCTAAACTATTCAGCATGCATATATTAGCTCTTTGCTCTTGACTGTATATGATGAAATAGCTGTTCTGAGCTTTTTCCTTTGTGACTTTTCTTCTACAGTGGGCTACAATTTGGAATTATAAACTGAAAACTTCTCTTTCCCTTACATTGCCTTTTGTCAGAGTATTATATCAAAGCAACTGAAGTGAAGCTGTAGCCTCCATTTAGAAAAGCTAGCTTGCCATTGTTTGCAGTTTATCATTGTACATTATTTACACATTCAAAGGTATTTAGAGACAAGAATGCCTTGTTTTTAAATATGTTAAACGTCATGATTATTGTCAAGATTAAGTTAAGCTAACCACAGAGTATATATTGTAGAATATAATTACATATTTTGCAATTTCTACTACTTTTTTTCATTCATTAATTTATTAACTTTACATCCTGATCACAGCCCCACCCCCATATCCTCCCCTGAGGCACATCTCTGCAAGGCTAGGTGCATTCTCTCCCACTGAGGCCAGACAAAGCAAACCAGTTAGGGGAATGGGATCCATAGGCAGGCGACAGATTCAGAGACAGCCCCTGCTACAGTTGTTGGGGGACCTACATGAAGACCAAGCTGCATATCTGGTATATATGTGTAGGGGCATATTTTGTAATTTCATATATTTTTGGTTGTGAGCCTAGCCTTTAATGGTTGATCCATCTCTCCAGCCCTGTAATTTCTTGTCTTTTTTTTGAATTTTTATTAGGTATTTACTTCATTTACATTTCCAATGCTATCCCAAAAGTCTCGCATACCCTCCCTCCCACTCCCCTACCCACCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATACAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCAACTAGGCCATCCTCTGATACATATGCAGCTAGAGACATGAGCTCTGGGAGGTACTGGTTATTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGTGTACTTTCTCTAGCTCCTCCTTTGGTGGCCCTACGATCCATCAATAGCTGGCTGTGAGCATCCACTTCAGTGTTTGTTAGGCCACGGCATAGTCTCACAAGAGACAGCCATACCTGGGTCCTTTCAGCAAAATCTTGGTAGTGTATGCAATGGTGTCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTGGGTATGGCAGTCTCTTGATGGTCCATCTTTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGATTTGTTCCCAATTCTAAGAAGGGTCAAAGGGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATGTGTTTTGCAGATTATATCTTGTATCTTGAGTATCCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGAGTTGCCTGACTCAGAATGATGTCCTCCAGGTCCATCCATTTGCCTAGGAATTTTATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATCATAAATAAGGCTGCTATGAACATAGTAGAGCATGTGTCCTTCTTACCAGTTGGAACATCTTCAGGATATATACCCAGGAGAGGTATTGAGGCATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAACTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGAATCTGTTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAAACTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCTAAACAATTTTTCAGGTGCTTCTCAGCCATTCGGTATTCTTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTAGTTGATTTTCTGGAGTACACCTTCTTAAGTTCTTTATATATATTAGATATTAGTCCCCTATCTGATTTAGGACAGGTAAAGATCCTTTCCCCATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACATGAGGTCCCATTTGTAGATTCTCGATCTTATGGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAATTCCTTGATCCACTTAGATTTGATCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGTTAACCGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCACTGGATATTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAAATATGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCGTCCAGCCCTGTAATTTCTAAGAGATGATATTAGAACAAAAATGATTATTACTTAAAATATATCTCTATTATAAAAAATACTTCTTGTAGGGCTTAGGACTAGACACAGGACCTTGGGTGATCTAGGCAAGTGCTCTACTACTGAGCCAAATGCCCAAACCAATGCTGCTTTTGATTTTTAGGGAAGATAACTCAGTTTTCCTTCTTTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTCCTTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTCAG
Seq C2 exon
AATGGAAGTCTTGCCAAAGCCATGGAGGAGGTCTTTTCTATCTGCATGCAGTTACATTAGGGATCACTTGAATGCAATGAACCCTATGATGCTGGCTGTGCTGGATCTGTGGCATAGCACTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
-Dnahc7b:NM_001160386:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: