BtaINT0050734 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12702786-12703271:+
Coord C1 exon
chr23:12702786-12703027
Coord A exon
chr23:12703028-12703130
Coord C2 exon
chr23:12703131-12703271
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ATTCTGTTTCTTTGCTGTAGGCA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTGAAAACATTTTCCTCGTTTTAGATGGCCCTGTGGATGCCATTTGGATTGAGAACTTAAATTCCGTGTTGGATGACAATAAAACCCTCACACTGGCCAACGGAGATCGCATCCCCATGGCCCCAAGCTGCAAGCTTTTGTTTGAAGTCCACAATATCGAGAACGCCTCTCCAGCCACGGTTTCTAGGATGGGCATGGTGTACATCAGCAGCTCTGCCCTCAGCTGGAGACCAATCCTGCAG
Seq A exon
GTGGGGACTGGAGACCTACAGAAGCGCATTTAGTATCTTTCCATGTCTCGCTTTCTCCATGTCTTGCTCTCTTATAAACAGAGATTCTGTTTCTTTGCTGTAG
Seq C2 exon
GCATGGTTGAAGAAGCGTACTACTCAGGAAAATAATGTATTCCTAACTCTGTATGATAAAATATTTGAGGATGCATATACATTTATGAAACTGAACCTCAATCCGAAAATGCAGCTCTTAGAGTGCAACTATATTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(46.0=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGATGGCCCTGTGGATGC
R:
AGTACGCTTCTTCAACCATGC
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]