GgaINT0087328 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30665225-30665686:-
Coord C1 exon
chr3:30665445-30665686
Coord A exon
chr3:30665366-30665444
Coord C2 exon
chr3:30665225-30665365
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
ACATTGTGGATGTTCTTCAGGCA
3' ss Score
6.05
Exon sequences
Seq C1 exon
GTGAAAATGTGTTTCTGGTTTTAGATGGTCCTGTAGATGCAATCTGGATTGAGAATCTAAATTCAGTTTTGGATGATAACAAGACTCTCACTCTAGCAAATGGAGATCGAATTCCCATGTCTCCTACTTGTAAGCTGTTATTTGAAGTCCACAACATTGAGAATGCTTCTCCAGCAACAGTTTCTCGTATGGGTATGGTCTACATCAGCTCTTCTGCCCTTAGCTGGAGACCAATATTACAA
Seq A exon
GTAAGATTATCGTTGCTAGCTACTCCTAATTTTACTTGGCTATATGCTTATACCAAATAACATTGTGGATGTTCTTCAG
Seq C2 exon
GCATGGCTGAAAAAACGTTCTGCTCAAGAAGCTGAAGTTTTGCAAAGTTTGTATGACAGAATCTTTGAACCAGCATATACATACATGAAACTAAACCTTAATCCAAAAATGGAGCTTCTGGAATGTAACTACATTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(46.0=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTTCTGCCCTTAGCT
R:
TGTAGTTACATTCCAGAAGCTCCA
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]