BtaINT0050748 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12740671-12742719:+
Coord C1 exon
chr23:12740671-12740835
Coord A exon
chr23:12740836-12742492
Coord C2 exon
chr23:12742493-12742719
Length
1657 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TTTGACACTTCTGTCGCTAGGTT
3' ss Score
8.47
Exon sequences
Seq C1 exon
ATCTCCAATTTGTTTGCACGGGACGAGATGGATGAAATCACCCAAGGGCTGATATCGGTCATGAAAAGGGAGCTCCCTCGCCATCCTCCCACCTTCGATAATCTGTATGAGTACTTCATTTCACGATCAAGGAAGAACTTGCACGTTGTTCTCTGCTTTTCTCCA
Seq A exon
GTGAGTTTTTACTTTAGTTATTTCTACGTAGGAGGAGTTACTTCCTTGAATGTACTTAGTTCGCCTTCTCTGATGAGATGATTTGCTCAGAAATGAACACTTGTTACTTCTTGACTACCACCAATCTCCACTGACCAAAATCATACTAAAGAGTGAAAATTGAGTGTACTCATTAGCAATTATTGCATACCCTACAACTTTGATTACCTAGAGACAGAAATTATTTATTTTAAGGGATTTGGTGATATAGTCTTTTCTAGCTTTAGCTCCAATGTATTCATACCATCTAGAATGTCCCTGATGTAGGTTTGAATGTCTCTCACTCACTGTGCTATCCAGTATTGTAACCATTAGCCATGTGTGGCCATTTGATTTTTGATCAGTTAAAACTAAGTAAAAATGAAAATCCAATTTCTCAGTCCCACTAGCTTCATTTCAAATATTCAATAGCTGCACGTGGCTAGGGATTACTATGGAAAGCACACATATAGATCCTTTCCATCATCATAGAAAATTCTATTGGGCAGTTCTGCTCTTGGGGGTGGGGGAGGTGGCTCACTAACTTACAGGGCATCTTGCTTAATTTTTAGGTAGTCTAATAGCCAGAAAGGTCTTCTTTACAAACAGTGGAATTTTGTCTCTGACTCTTCACCTGTGATTTCGTTTGTCCTGTAAAGTGAATCCAATCCCTCTCCTTTACTCAGCTCTTCAGATATTTGGAGAAAGTTTCTGCAGACTCCCTAAGTCATTTCTTTTTTAGACCAAACACCTCCCATTCCTTCTGCAGATCTCACTTGCCCTGGTTCCAGGCCTTTCACTGTCCTGGTCATCTGTCTCTGTAGAAGTGTGCTTTGTCAGTTTCCTTTTTTTTCTATCCATTTTTCCTTTATTGGAACAGATCTTTAATGTCAGATTGTTTAAAATTTTCTTTAAAATTTTAAGTATCAAATTTAGTTGTTTTTTTTTCTTGCCTAAGAATCCCTCTTGAGCCTCCCACCCGCCTCCTGTCCCGCCCATCTGGGCCGTCACAGTGCGCCGGGCTGGGCTCCCTGCGTTGTGCAGCAGCTTCCCCTGGTGGTCTCTCTTTTACATGGTAGTGAATACATGTCACTGCTACTTTCTCGATTCGTCCTACTCTCCCTTCTCTCACTGTGTCCACAAGTCCGTTCTCTATGTCTGCATCTCTATTTCTTCCTTGTAAAGAGGTTCATCAGTACTGTTTATCTAGGTTCTTATATATGTGTTACTATACAATATTTGTTTTTCTCTTTCTGACTTACTTCACTCTGTATAACAGGCTATAGATTCATCTCCTTCACTACAAGTGACTCAAATCCATTCCTTTTTATGACTGAGTAATATTCCGTTGTGTGTTTGTAGCACATGGTCAAAGAAGATGTCAGTGTCTTCTTACATGGGAGCTCCTAGAGCAGAATGAGTCTTAGGGAAGGAGGGAATGTGGAACTATTACCTCCTTGCACCTGGACACTTCATTTACATATTCATGCAGTCTAAGAAGATTTCTAAAATAATGTGTTGTGTCAGGCTATTGGCTCAGAATATAAAAAGGTCTCTCTGCATGACTTATCATCCCTCTGTGTTTTTTGAAAATATAATTTTTAAAATGTATAATGCTTTTTGACACTTCTGTCGCTAG
Seq C2 exon
GTTGGTGAGAAGTTCCGTGCCCGCTCTTTGAAATTTCCGGGCTTGATCTCGGGCTGCACCATGGACTGGTTCAGTCGCTGGCCTAGGGAGGCGCTGGTCGCCGTGGCCTCCTACTTCGTCTCAGGCTATAGTATTGTCTGCTCTAGCGACACCAAAAGACAAGTTGTAGAAACAATGGGCCTCTTTCACGACATGGTTTCAGAGAGCTGTGAAAGTTATTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATTTGTTTGCACGGGACG
R:
GTCGTGAAAGAGGCCCATTGT
Band lengths:
353-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]