GgaINT0087343 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30645339-30646282:-
Coord C1 exon
chr3:30646118-30646282
Coord A exon
chr3:30645566-30646117
Coord C2 exon
chr3:30645339-30645565
Length
552 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GACAGTGTTACTCTCCGTAGGTT
3' ss Score
8.1
Exon sequences
Seq C1 exon
ATTTCTAATTTATTTGCTCGGGATGAATTGGATGAAATCACCCAAGCATTAATACCAGTGATGAAAAAAGAGATGCCCCGGTGTCCTCCTACCTTTGATAATCTGTATGAGTATTTTTTAACTCGGGCAAAGAAGAACTTGCACGTTGTCCTCTGCTTTTCTCCT
Seq A exon
GTAAGTATTTTCTTTATATCTGGCTTCTTTATTTGCATTAGTAAAATATCCTGGAAGTTATGACAGGATTATTCAAGGTTTATATTTTTAGGGAAATTTAAGGGCGCATAATTAGATTAGTGAAGTCTGGATTATAATTGCTGATACATTAGAAGTAATAGTGCAGTTGTCAGAACTTAAAAGCAAATACTTGAAAGCTGTCATTCTTTACACGTTAAATTGACTTTCATTTTTCCCTCCTGGCATATTCTTTCCTATTACAGATCAGTGTGTGCAGCTTTATGAAATTTTTACCTGTTTCTCGTTTTCGTGAAAATTAAAAGACGTTAATTGAAGTTTTGAAATATTAAGAAGCATTGATATTTTTCATGATCTTCTTCAAATTTCTTAAAATACTGAATGTTGCAAATGTAACAAAATATTTAAAACAGAAAGTAATGTGGAAAATTAGCCAGAAAAAGTATAGTATATTTAGTTGTTCATATGCATCAAGCATTTTGATCAATTTAATTTAGATACTGTATTATAAACTGACAGTGTTACTCTCCGTAG
Seq C2 exon
GTTGGTGAGAAGTTCCGTGCACGTTCCTTGAAATTTCCTGGTCTCATATCAGGGTGCACCATGGATTGGTTCAGTCGATGGCCCAAGGAAGCTCTTGTAGCTGTAGCCAGTTATTTTCTTTCAGATTTTAATATGGTCTGCTCTGCATCTGTTAAAACACAAGTAGTAGAAACCATGGGTCTCTTTCATGATATAGTTTCAGAAAGCTGTGAGAATTATTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.9=100)
A:
NA
C2:
PF127802=AAA_8=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCGGGATGAATTGGATGA
R:
TCATGAAAGAGACCCATGGTTTC
Band lengths:
342-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]