BtaINT0050758 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12758221-12760177:+
Coord C1 exon
chr23:12758221-12758392
Coord A exon
chr23:12758393-12760021
Coord C2 exon
chr23:12760022-12760177
Length
1629 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATCCATTTCCTATTATGCAGATT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCTTGTAGGGGATATTCTGCTGTGCACTGGATTCCTGTCCTACCTTGGTCCTTTCAATCAGATATTTAGGAACTATTTGCTGAAAGAGCAATGGGAGATAGAGTTGAAAGCACGGAAGATTCCTTTCACTGAAAACCTGAATCTTATTTCAATGTTGGTAGATCCTCCAACA
Seq A exon
GTAAGTGTTACTTTCCTCATATCATTAGTTGAATTTCATTTTATTCACGAGAAATCAAGGTATGCCTGACTTATTCTTTTTGCATTTAATTGGAAAGATCATTTTCAAAATGCTGAAGCATGACAAATTTTTTTTTCTTTGTGGTACAAAAGTTCTTTTGCATTTTAAGAAATCTTGCTTTCAAATTGGTCTTTCAGTCAGGTCCGACTCTTTGTGACCCCATGGACTGTGGCCCATCAGTTTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGGGGGGTTGCCATTTCCGTCTCCAGGGGATCTTTCCAACCCAGGTATCAAACCCACGTCTTCAATTGCACTGCTTTGAGTGAAAAGATAATTTTTGAGCTACAGGCTTGCTAATATTGAGCTCTTCATATAACCCTCCATTATTTACACCACTCTTATTGAATCTCATTCTTTTACAAACATTCTAGGAAGATGTAGGCATTAGCTAGGCTGTAAGTATTGGTATTATTAACTTTCTTTTGATTATTAACCATCTTTTTATAATGTCTAACAGTGTAATACAATAGCACATTCTGGCATCGCTGAGTGATAGCATGCACTGCTAGACTAACCTTTCTTGGTAGGAATTTGATGCCATTGTTAATTTTCAGTATATCTTACAGACCTCTTGCAGTGTTAAATGCTTTCCAGGCAATTTGTATTCATGAGCTGATTTTTGATTTGTAAATATGTTCCCCAGTTGTAGTTTCCCAGGGGAAGCCAAGCTATTAATTTCAAGTTATCTCTATTTAAAAGTCAAAAAATTATCTTTTCCAATTCAAACAGTGTTCAGCTGGTCCCCACAGGTACTAGATAATGTATTGGAAACACACTGATTATGGCCTTCAGAGGAGCTAAGATAATTTGACGAAGGTGGAGGCTTCTCTGCATCTTGGGTGATTTCATTGACCATGTGGGGTCAGGCTTCCCAGGAGGCACAGTGGTAAAGAGGCCACCTGCCAATGCAGAAGTTGTAAGTTCTGTCCCTGGGTCAGGAATATCCCCTGGAGTAGGAAGTGGCAACCAATTCCAGTATGTTTGCATGGAAAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTTCATGGGGTCACAAAGAGTTGGACATGACGGAGTGACTGAGCACAGCGCCTTCTTGATTTTGAAAGGAATATTTAGAAAACTGTCATTGATGAGTTCCTGCCAATGTGATATTTCTTGTCCCCTAATTTCTCTGCCTCCAGCTGTGCAGTGCCCCTTCCCCCATGTGAGCAGAACAAGAGGGCAGGAAGGGGAAATTTCAGAGGCAGAACCCTTAGGGCTTGCCTACTCTGACTTCTCAGAATATTCATTGTCTCTGCTAACTCCAGCCCATCTAGATCCCACCCAGTCTCGGGTTTCCTACTAGGGAAAGGATTTATTAGACGATAAATTTGTTTAACTTAGTGTTATTTGGTTCACATTTGTAACTTTGAGTTTTTTTATGTGAATGTTGCATAATCCTAATCTAAAAAAAAAAAGTCTAAATTTTAAATTATTTGTGGCATTAATTACTAACAAACGCCTTCTCGTCTTCCTTTGTGTGGCCACATCCATTTCCTATTATGCAG
Seq C2 exon
ATTGGTGAGTGGGGGCTGCAAGGCTTACCAGGAGATGACCTCTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCACTCCTCATAGACCCACAAACTCAAGGCAAAACGTGGATTAAATCAAAGGAAAAAGAAAACGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
A:
NA
C2:
PF127812=AAA_9=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGGGGATATTCTGCTGTGC
R:
CTGCAAGTCGTTTTCTTTTTCCT
Band lengths:
326-1955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]