GgaINT0087352 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30635559-30636561:-
Coord C1 exon
chr3:30636390-30636561
Coord A exon
chr3:30635715-30636389
Coord C2 exon
chr3:30635559-30635714
Length
675 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTTTTTAAATATCCTGTAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
ACTTGTGGGAGATATACTGCTTTGCACAGGTTTCCTTTCATACTGCGGACCTTTTAATCAAAATTTCAGAAATCTTTTGCTTAAAGATTTATGGGAAGAAGAGATGAGAGCCCATAAAATCCCCTTTTCTGAAAGCTTGAACTTGATTTCTATGCTGGTAGATCCACCAACT
Seq A exon
GTAAGTTCTTGGTGATCAATAAACTTCATTTCAGCCTCAATGTGCATGTTCTTTTGGTGTTAGCCATCATTATGCTTAGCTGGAACAGGATGATGATTCCCTGATATTGCCATGCAGTGCAGTTTTGTTGTTTTCCAACAAACTTTTGTGGCAATTTTCATTACAGACCTAAGTAATGAGGAATGTTTAGATACAAGCAGATAAATAAGTTATATATTATGCAATTAGAAAGTTGCCGGTAAGACAGTGAACTTTCAAGTATATTGTTTGAGAATCTGTCACCAGATCTACAAAATTAATATCTACTAAGACAGTGTTGCTTGTTGCTAGTTTTTAGTACTCTCAGTGTTTTCTGGGTCTAGTTAGAAAAATAAATTTTATATTAAAGCAAACGTTTAACAGAGAATGTATGAAATATTTTCACTGACATCAAACTGAAGACAGTATCTTTCCAGAATCTCTAAGTACTTTTCAGCAAATACTAAATGCAAAAAATATCTTTGTCTAGTTTTCTCTTAATTGATCCCAAAGCTTAACTTGGCTGCCAGGTTGACTTGTCATTTTTCTAGACTTTTAAGATGTATTTTTAGCATTGAGAATAATCTTATCTGAAGGATAATAGTTTAAGTGAGCTTTTATTCCAAACTACTTTTTTTTTTTTTAAATATCCTGTAG
Seq C2 exon
ATTAGTGAGTGGAATCTTCAAGGACTGCCTGGAGATGACCTCTCAATTCAGAATGGTATAATTGTCACTAAGGCAACTAGATATCCCCTTTTGATAGATCCACAAACTCAAGGGAAAACATGGATTAAAAAGAAAGAACAGGATAATGAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
A:
NA
C2:
PF127812=AAA_9=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGATATACTGCTTTGCACA
R:
TCCTGTTCTTTCTTTTTAATCCATGT
Band lengths:
311-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]