BtaINT0050782 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31005493-31007810:+
Coord C1 exon
chr19:31005493-31005561
Coord A exon
chr19:31005562-31007683
Coord C2 exon
chr19:31007684-31007810
Length
2122 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CATTGTCTCTGATCTCACAGGTA
3' ss Score
10.09
Exon sequences
Seq C1 exon
TTGCATGGAATCTGCCGAAGCAACGCGTATGATACAAAAATATGAAGACACGCTTTCATTGCTGGAAAA
Seq A exon
GTAAGCCGCTTCTGCGGTTGCATCTTTTTGTAAACTGAAGCCCCCTCCCAACACCCGTACCCCTCTTCCCCCCGCCCCCCGCCCCGCTCTACCATCGCCCCGTGCAGTCCCGAGTGTGTCCATGTTCCCCAGCAGCAGTGAAGCGTCACTCCATGTTTTATGTTATAATCACGATACCTGTGAATACAGTTCTTCTGGGTCGCAAACACCAGGTCTCTGGGGGGACGTGGCTCTAGTCTAGAAACAGCTGCTTTTCCAGTGTAGTTTCGAGGGGAGTGAGTTTCCTAACTCGGCAGAACTAGAGGTGCAGTGCTCCCCGTGTCTCCCCGAGATCAGGGTCCCAGGAAGTCAGTCGCTGCTCACTAAGCAGGTGACAGTTGGCACTGCACGAAGAGACAGTAGGTTAGAAAAAAATACTGCCCGAGTCCTTTTATGGAGAAAGTACAAGAATGAAGCTTTTACATGGGCTCACAATTGTCTGGTCTTTTGAGGGGACAGGGTCCAGATACAACCCACGTCTTGCTGCTTCTCTCTGATGCTGGCTCGTCTCCTGATTCAGGAGAGGAGGGCTGCAGACATGACAGTTATGATTATAGTTGTGGTCACACTTAGCATTGTGGAGACTTAGCGTTAGCTGGGCCATCCCCACCTACCAGGTCACCCACGTTCTGTCCCTTCGACTTCCTGAATTCTAGCTTCCAATCTGCCCCCTCCTCTGTGTCCCCACCCCCTACATCTTCAGCAAAGACCAGAGCGTCTTGGGCCCGAGCTGCTGCAGCAGCTCCTCCGAGCCTCCCTGCTCTGAACCTGTCCCTCAGTGCCCACGTCGTCATCGGATCCCCTGTCCCCACACCCCGTGTCCCCCCACGCACCCATCTGGGAAGCCTCTCAGTACCTCCATCATCTCCTTAATGTGAAATGAGAAGTGCTCCCTGGGGACGTCCCTGGTGGTCCAGTGGCTGGGACTCCACACTCCCAATGCAGGGAGCCCCAGTCCCATCTCTAGTCCAGAAACTAGATCCCCCATGCCAAAACCAAGAGTTCATATGCCTCAACTAAAGATCCTGCATGCCTCAACTAAGACTTGGTGCAGCCCAGTAAATGTTTAACAAGAAGGCAGAAGTGCTCGCTGATGTAGCCTCCCTCTCCCGTCCTGGCCCTCGCCCCCTCCTCCCTCTGACCTACCGTCTACTCACTGTCCCCAGCACACAGCACACAGCCTGCTGCTCCTGCTGTGAACACTCACTCCCCCATCGCTGCCCAGCCACCATTCATCCTCTGAGACTCAGCAGACCGTCACTTTGGCCCCTCCTGTGTGAGGCCCTCCCCAGCATCCTCTTTATCACCCCTACCCACTCACCTTCTTCTGCCACTTGAAGCCTGCTGCCCTGTATACTCCCTGTGTCCTCCATTGACCTGGGGTTGTAGCACTAGCTACATTTGTTGTGGGGTATTTATTCATCATTTCCTCTCCCAAGCCCAATACATCAGTGTGAAATGACTGAATAGTGCATGTCCATGAGCTATGTGAAGATTAGTATCAGAGGAAACCTTACTCAATAACTTCTTCCAACGTTTCCTAAGTCTAATGGCCACTTCCCTTATCCCCCCAAGGTCACATGGAGCCTCTCTTTCCACTCTCCCATGATTTAAGTTATGCCACCTTTAGAAACAAGGGGTTACATGTAGAAGCTGCCGTGCCTGGCCGAGTCAATGACTCTGACTTCATAACGTACTCAAATGTTTTACAAATTAGCATCTTCAATTCATGAGACGTACATCTTAAAAGATAGATATAGAGAGGTTGGCGTCCCTGGTGGTTCAGTGGTAAAGAATCCTCCTGCCAATGCAGGAAATGCTGGAGATGCAGGTTTGATCCCTGGGCCAGGAAGATCTCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGGTGGGCTGTAGTCCATGGGGTCACGAAAGAGTAGGACATGGCTTAGTGACTAAACAGCAATGATAGAGATGCTATTTTATGTATACATCTATCTATGTAGATATATCTTCAGTTAATCATTGCCAGATGTTGGGAAGCTGGGAGGGTGCGTGTGAGGTGCCCATTGTCTCTGATCTCACAG
Seq C2 exon
GTATGAAACAAGACTTTATGGGGACTGGTGTCAAACAGTAGCAGAGAAGTCCCAGTACAACCTTTCACGGCCACTTCTGAGACGTGACCCGGAGACAAAGCAGATCACTGTCAACTTTAGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(3.9=100)
A:
NA
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development