GgaINT0127341 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1027600-1029022:+
Coord C1 exon
chr18:1027600-1027668
Coord A exon
chr18:1027669-1028895
Coord C2 exon
chr18:1028896-1029022
Length
1227 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGTATTTTTTTCCTGCAGGTA
3' ss Score
12.64
Exon sequences
Seq C1 exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
Seq A exon
GTGAGTGGTGGGGCAGGCTATGCTATAACTGTACAAAATAATGTTCTCATCCATGCAGCCTACCAGCATGCTTGTCGGTCCAAAGCCTAGGAATGTTCCTTTCTAAGCCAGAGAGGGTCTTCTGATGATAGATGAGGAGGAATCCTTTTGCTGTATGCCACAGTCTTCCTGTGATGTCTTGCAATGGGAAGATTTCCTGGGAGGAGCCTAGCAGAAGCACTGGGAAAGCTTCTACTGGGTGTAGAAGTTGCTATGGTTGAAAACCTGGACTGACCAGAAGTTCTGCTGCTTTTGTTCATTCCCAGAGTGTATCTACACTGCCTGTAATATGTATTTTCCACAACTCACAGTGGAATTCATTATCACTGACTTAGTATCTTAAAGTTTGATATTAAATCTGAACTGGTCACTCTGGGCTTTCCCTTGTGAAGTGACAACCTCCCCAGCCAGGATTCGTCTCTGCAGAGCCTGCTTTTTCCTGGCCAGCAGTGCAGGTAGCTGAGACACAGTGCAGGTAGTTGAGACACAGGATCCCTGGGAAACACAGGGCAGGTGGAGGCAGCCTTGGTCCTGATGATCAAACCCGCTCTCCCCCCCAAAACACTGCGTAATTATGATGCAGCCTTTCAGAAGAGAGCAGACCAATGGTGAGATCCTTGGTGACTTCCATAGAAATGCTTTCTGGGTGACATTTCCCAGAGCTCTCAGGTGACAACATGATTCAGAAGAGACTTTGCTGTTTGGGTGCTTGTTGCTATCCTTGTCATGTGAGCTAATAAGACCCAGCTTCAGCCTTCAGAGGTGTCACTGAGTTCTCCAAGTGCTGGATCTCCATGAGAATGATGGTTTCTCACTTCTCTAAGATAAGTGAGTGCAGTGGTATCCAAGGATTTGTATGGGTGTAGACACCTGTCCTGCTTAGAAACATTGGAAATGCCCAATAGTTACTTACCTGTTACTTCTGGCCAAATGCCTTAGAATTCTGTCTCCAAATCAGTATCCTCTGCTAAAAGTGGTATTTGAGTGCTGTTTGTCCTCCTGATTTGATAATGTCACTGCTTTTTGGGTGTCTGTCTTCGAAATCAAGTTAATTGTGGAAATGATGTGAAAGGTTTTTTTTCTCATCCTTCATGTTTAACTTTCAGAAGTGGGCTTGGCTTCATCTGCTTATACGCCTGGTCTGCTGGCTAAATAGCTACATGATGAATGTGTATTTTTTTCCTGCAG
Seq C2 exon
GTATCAAGAAAAACTGTACATAAACTGGTCCCAGACAGTCTCTGAAAAGTCACAGTACAACCTCACTCAACCACTCATCCGGCGAGAGCCAGAAACCAAACTGCTCACGGTCAATTTTGATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(4.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGACTCTCCTGAAGGAA
R:
TGGGGATCAAAATTGACCGTGA
Band lengths:
193-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]