RnoINT0049235 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52659811-52662105:-
Coord C1 exon
chr10:52662037-52662105
Coord A exon
chr10:52659938-52662036
Coord C2 exon
chr10:52659811-52659937
Length
2099 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
CTCATCTCTGGTTGTTACAGGTA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTGCTTGCAATCTGCTGAAGGAAAGAGAATGATACAAAAATATGAAGATTTGCTCACCCTGCTAGAAGA
Seq A exon
GTAAGCAGCCTCGGGATTATATCTTCCTTAGGATTACCCAACCCCAAACCCCCTCTCCCCACACCCCATACCTTCTCACCCCTATACCCTCACAGCCATGCACTTTGTCATTCACAGGGCAGATTCTATATCAGCTATGAAATATCATTGTGTAGTTTATGGTATAGCACAGGTATTTGTGAGCACAGCATTACTGGGCCTTGAGAACAAGTCTCTGGGAGAATGTGGCTGTATTCTGGACACAAATATGTTCCTAGTGTCACTTTCCTGGGTCTCTGAACCTTGTGGAATGGAGTGATGCTCTGAGAAGCCTGAACTTTCAGTTGCTACTCAGTGAAAAGAAAGCAATCGTTTATACTGCAAGGAGTGAACTAAGTTCCAAAACATGTTCTCCATCCTTTTAGAGAGACAACATAAGAATGGAATTTGCACGTGGGACCATACTTGTCCCTGCTCTGGAGCCCAGTGAATCTTTCACAAGTTCAAGGTTGACAGGCACCTCTTCCAATATGGCCCTACCTTCTGCTTTTGCCATTGCTCCTTCTCCTGGCTCTGGAGAGCAGGGTAATAGGCATAAAGGCATCTGATACTGCTTGCCATTGGGTTAGACAAATGGACTCATAGCTCTCTTCTACCTGCCAGGAACCCACATGTCTACCCTTTACCCTGTAAATGTCTTAAGTGTATTTTCCCTTTCCTGTCTCCAGGACTGGAATCTTCTCAAAAAGACCCACATCTGCTCCAGACTGACCTACTGTAGCAGCTTCCCGACAGCCCTCCTTATTTGTGTTCCTTGATGCACACACTAGCCAAATCCAATGCTTTCACTGTAGCCCCACCCCTCAGGGGTTCCCATTGTTCCCCAGTCTTTGCTTCCCTCCAGCCTCCTATGTACTATTCACCCTTTAATCCCAGTTAAGTCAGGCTGTTTCTCCCCTCGCCATGGCTTCTGATGGGATTCATCCCACCACCTCTGCTCAGCCATGAGACAAGTCAAGCATTGCTCCATCATCTCTCCCATGAGGTTTTCTTCGACCTCCTTATTCCTGCCATCCGGTGCCCGACACCCATGGCAACTCTCTAAGGCTGATTTTGCTGTACTGTGTTATTCTGATCTTCCAGTAGTCCCCACCATTAGCTGTGTCTCTCAGTTATTAATTCATGAATTTATTCTCCAAGCCCAGCACATGGCACGTACCCAGTCAATGTGCAATGACTGAATAATGAATTCCGCGAGCTACTCAAAGGTTAGTGTGAGAGCAGTTGTTACCAATATCTTCTTTTATATGTCCCTGGAGCTAACCAGAACCTTCCATTCTCACCTCCCCCCTCCAAGGATCATTGAAAGCTTTCTGATTCTTTGCAGATCGCAGTGGTGTCATCTGTAAAAGAATGTATATTATTAGAAATGTGTGCAGTGAGTTAATATAGTGGCTGTTTTTCTTTATCCTGGCTGGTTCCCCTACAACAACACAGAGAGATCAAGATTTATTTGCAAATTAAAAGCATAATAACCTAGCATTATTCTATCCCAATCCTCTAATCTAATCTGGCTACGTATCAGCCCAAATCACTGAGACACTTGCATGTTTGTATTGGTCTGGCTCTGTAGGCTTCAGGTGTGTTCCCATGATGTCTCTCTGGACCTCTTCCTTGTGGTGAATTCTCTCTTCCTCCCTTTCCCTCCCTCCTCCTCTGGCTGGCAGAAGGAGAATAGAGAACAATTTTCTCTATTACCTAATTATTGGCTTTTCCAGCCTTTATTTACAAGGTATAGAATAAATGGTGAGCATTGTTTACACAAATTTGAGACAGGAGATTCTTAACATAAGCATTACAATGCCATGTCCAGATTGAAACCAGATAGCGGGATAGAGAAACTAGCCTTTGTATAATATAAATGGATAAATTTTACACAGTGCACAATAACATTATGCCTACAACCACCTTCAAGGATCAGTGGGCCCCTGAAAGAGCTGGCTCATCCTGGCTGGGTCAGAGACTAGTTGTTTCTCCAGGTTGTTTTACTACAGAGCTGAGCCAAGAGCTGGGGGTTCACAGCCTGTTTCTGAGGTTGCTCTCATCTCTGGTTGTTACAG
Seq C2 exon
GTATGAGAGAAGACTTTATGAGGACTGGTGTCAGACAGTGTCTGAGAAGTCACAGCGCAATCTCTCCCTACCACTTTTGCATCGTGACCCCATCACAAAGCAGCTCTCTGTCAACTTTAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(4.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]