BtaINT0050838 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31198460-31200901:+
Coord C1 exon
chr19:31198460-31198600
Coord A exon
chr19:31198601-31200730
Coord C2 exon
chr19:31200731-31200901
Length
2130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
GTCCTATCTCCTGCCCCCAGGCC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTGCAGGAGGCCAAGGTGACCGAGGTGAGAATCAACGAGGCTCGGGAGCACTACCGGCCGGCCGCCGCCCGGGCCTCTCTGCTCTACTTCATCATGAACGACCTCGGCAGGATCCACCCCATGTACCAGTTTTCTCTCAAG
Seq A exon
GTGACTTAGCCCTGGAGCCCTCTGCACAGTCATAGCACAGCAGCGTGACATGCCCCGTGTGGCTCTGCACAAGGGCTTGTCCGTGGGCTTCATTAGCCATGGCAAGTCTTTCAGACCAGATCCAGGAGAGCAGCGACTTGGCCTTACAGGCCTCGTCTCTCTAATTGGGTCTTTCATGACTCATTGGTTATTTGGCTAAAACAGAGGGAGAGGCCGTGGCAGGTCCCAGCCTCGTTCGCTCAGCGAGTACTTAAGATCCAGCCAGCACTCTGCTTCCTGACCGTGTGGAAGAGGAAACATCGGCAGGGAGCCCTGCCCCAGAGAGCTTCACAGCTAATAGGGCTGATCAAATGTGCGCCTCCCTTGTATCTGTTAAAACCAAAGCAGGCCATACTAATAGTCCAACTTTAAATTAGTGTCCCTATTACCCTAATGGGGGGTGGTGCAGTGGTAAAGAATCCACCCGCTGTTGCCAGAGACACAAGAGATGTGGGTTCGATCCCTGGGCCAAGAAGATACAGAGGAGGGCATGGCAACCCACTCTAGTATCCTTGCCTGGAGAATCCCATGGACAGAGAAGCCTGGTGGGCTACAGTCCAGGGTGTTCACAAAGAGTCAGACAACTGAGCACACACACACAATTACCCTAATATCCTCAAAGCTACTGCTTTGTGGTTGCTGACATATTTCTAAAATCAAAGATGTTAGCAGATTGTAAGTGCTAACTAAGCTTATCTTACTCATGAAATAATAAAGACCTATAAATTTTAAGTACATCTCTGAAAGTATATCTTTCTCCCATAAGGAGTTCTCCAAAAGACCACAGCTGCAGAGTCTGTATGGGGCTCTGAACAACTTTTCTGGTTTAATCCAACAGAGAGGACACTCATATTCAGGGTGCACACCTCATCCAGCTGCCCCCTGAAAGCCAAGGTGTGGGGATGAAGCTGAGCCACTGAGAAGGAAGAAGGCTTCCACGCCTGGACCTCACTAGGCTGGAAATGGCGTTTCATCCTGCCCCTATTCCCTCCCCTAAGCTCAGAGTCTCTGTAATATTGTATGTTTTTAAAAGAAATCCAATACTTGACATTATATTCAGGTCAAAGCCCCACTTGAAAGAAATATAAAGGATTTAAAAAACAGTATAGAAGTTAATGTGATAAGCCTAGTATCAGTGATACTAATCACCTCCCTAGTTTTGAGAATAGTTGAAATCTGTTGCAGTGACTTTTCCTGAAAAAGGGAAATTAGATGAAGCCCATGAAAATATGTGTTCCAAAAAAAAACCAAACAAGAAGACTGGAAATCTGCCTAGCCAAAAATTGAAAAGACCCAATAATATCTTAATTGTCATTTTCTTTAAAGATTCATCTTTGACTTTGTTTTCTTTAATGATTATTCTCTTTATTATTCATTCTTTAATGATACATTCATTCCTATTATCAATTTTTATAAGTAGTCTATATCTAAGTTTAAAATGATAGAAAATTGATTCATATGATCAGTATGAAAATGGATTTATATTATACCCGTAATGTACAATTTGGAAGCTGTAACCGAAGCAGGCTATGCTCTCACAGTTGCAGAAAGTGTACATAAGAAAAAAGCACATGTAAGAGGGCTCATCGAATGATGTGGAGTTACTAGAAAGAAAAACCAAGAACAGCTGATATTCTGATCATTATTACCAAAAGGAAAAGTAATTAATTAAAAATATTCTGAGTACCTGTTATGTACACAGGTCTCTTTTAGAGAGCAAAGTTGTACCAGATGTTCATTCTACCATCGGGAATTTTATAATCCAAAGGATAGAATCACCCAAACTGGTTACTGTTCATTGTGTTCAGTTTCCAACAAAACTTATTAGATTTAATTTAATTATTTTGGTCACTGGACCTAAACAGTAGGCTCTTCACTGTATGCTTCATAGCTTGGCCCTCTTTGTGACAACATAGTAATTTATACGAGCAACTAAGACAGGAGTTTTCCTGTTGCCACTGGCCCTCCTTGGCAGGTTATGCTGGGAAGATAGTTCTATGATTGGTGAATTATAATACTCACCAGAGGTAGGGCCACTGGTTACATACAGAGAGCTGTGTAAGCTACCAGTGTCCTATCTCCTGCCCCCAG
Seq C2 exon
GCCTTCAGCATCGTCTTCCAGAAGGCTGTGGAGAAGGCGGCTCCTGGTGAGAACCTCAAGGAACGGGTGGCCAACCTAATAGACAGCATCACCTTCTCTGTGTGCCAGTACACCACCCGGGGGCTCTTCGAGTGTGATAAGCTGACCTACCTTGCCCAGCTCACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development