GgaINT0127388 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1130984-1134834:+
Coord C1 exon
chr18:1130984-1131124
Coord A exon
chr18:1131125-1134663
Coord C2 exon
chr18:1134664-1134834
Length
3539 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTTCTTGTCTCCTCACCTAGGCA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCCAGGAGTCCAAGGTGACTGAAGCCAAGATTAACGAGGCAAGGGAGCACTACAGGCCTGCCGCTGCGCGGGCCTCCCTGCTGTACTTTGCCATGAACGACCTCCGTGCCATCCATCCCATGTACCAGTTTTCTCTGAAG
Seq A exon
GTACTGTCCCTACTGTCCCTGTGAGTCCCATGGCAGCACCACAGGGCAGCTGAGCTCTTTCCTGCCCTTCCCAAACTTAAAAGTCATTTCCTTGAGCACACTGAGGTTGCCTGAGCTCCAAGACAAAAAGGTGATGTAACCCAATCCCTTCTGCTGCTTTGACTGGGTGGAAAACAAACAAACAAACAAACAAAGCCAACTTGTAGTTCATTTCTTTATAAGTCTCCTTTACCTATATTAATCTTAATGTGCGTTATGAGAGTAGTTAGTGCTCACTGGGAAAGATTAGTCTGATACACTCCTGCAAATGCTGAGCAGAGTGTGTTCGTTGCTGCCTGTGTTCATTGCTTGCCTCTCCCAAGAAGTGTGGGAGAACACTTCTTCAGCAGTGCCCATGAGAGGCAGCCATGAGCAGTCTGAGCATCGAAGGAAAGGCACATCTGTGCTGGAAACTGGGGGTGGGCTGGCATCTGCCCTCACTCTGTGTTGGCTGGTCATCACATCACAGCTGGTTAGATTGAGATCACATTAGATCGGTTTAATGAGCTTTTCTTTCTTTTGCTTGATTTCTGTTGAGGCAAATGAACTGACTCCTTGTAGAAAGCCGCAGTCTTTCTGCATTAACAGCCTTGATTACTGAACGTTCCAGAAGAGTATTTGCAAAGTAGAACTTCACAAGCCATTTGTTATCCCCTCCATATTCACAGCCTTCTTGGCCTGGCTGAGGAAGATGAGCAATGGATTTGAAAGAGATCATCTTGGGAAAGAGCCAACAAAGTACTTTTTTCTGTGTATTTTATATATGTATGCGATAAGATTTAGCACAGTGTTGGGAGTCACTTGCTTCCTCAGTTAATCTTTTCTTTGTATTTGCATTTAGTTCTGTATCCGTGATGTCACTGGGGTCATAATGTCTGTGCAGATATTTCATAAGTTAACGAGAATTGCTGCTGCCCTTAACAATTATCCAAGACCTTGATGTTGAAACAGTCCTGACTTCCCAAATGACACAGTATTAAAACATCAAATTGCTCTGTAAACACAGCCCTGTCCCACTGAGACCTCAGCTCCATGGCTTTATTGTTGTCCTTGGTACAAAAGGCAAATCGTGGCCATTTCTGCCCGTCCATGGCAAGAAGTGTCCCCTACAAGAGCCCTTAGCCTGGAAGTCTGTGGACATCTGACCCCTTGCAGTGTGGCTGCTGGCAGGCTGGAGACAGGCAGGCTCATGGTAACAGTATGGACTCCCCCACGGGGATGATGCTGGGAGAGAACCTCCTTCTTGTCCTGTGCTCTAAAATAAATGCAGGACAGACGTAGCCAAAGGGCTTGTACTGCAGTGGCCTGGCTGCTCTTCTGTCTCCTCTACACAGTCTCCCCTTCCCTGCTCAGCAAAGTGTTGCTCTATAGTATGTGGACATGGTGAGCAAGAAATGTTGTCCCAGCTTTGGAGAACATTCCTTCCTGCAGCTGTTTCCACTGGAACACCTGGAGAATGCTTCTAATATGACATTACGCTGCAGTGTAGCTCTCTCTGTTCCTGGCAGTGGGGCTGAGCTGTCCCATTTGCCATGTGGCAGCAGAGCATGGTGGGAAGCCAGGAGCTTTGGTGGGAGTGAGACTATGACCTCGTGTTCAGGTTTCTTGACTGGTTTTGAAATATTGGCTCCTTTATGGCAGACGTGAGTAGGCTGAGACTCCACTTGCTGCAGTGAATGAGCTAGATCTTTAGAGTGAAATATGAATTCATCGCTCACATCTTTGCTTCATGTTGAGGCATCACTTCATCATTTGTTTTCTGCTCCTCGGTGGGAAGTGGGGCTTCTCTCAAGCTGTCTCCTCAATCCTGGAAGCTCCTCAGGCGGGGACCTGTTTTCTGCATTCCCTCCATACTGCCCAAGGCTGTGAAAGTGTTGGTCCCTGCTCAGCCTCTAAGGACCTGCTGCAATGGAAAGGAGTTGCTGTGATGGTGTCTATAGTTCTGGCCAGCAGAGACTGGTATTTATTGAAGAGTTCCATTTTTATTGTTTTAATAAATGGAACACTTTTTTTTTTTGTTATTACAGGAGAGGCATTTTGGGAAATGGAGGGTTAAATGAGATGGCATTGTAGTCTAGTACTTCTTCCAAATGGTTTCTTACATTGCCAAGTGACCTGGAAAAAGTAATTGAGAAGAGAATACAATATTTTGAGCCAATCCACAAAGAAGCTTTTCTTTTTGTTATCTACAATCCTTATGCTGAAATAATTTTACCAGGGAAGTGTACAGATATCTTTCATGCAAGGGTGCCCTTTGAAAGATTCATTCCCTACGCACACATAGTAGATATGTGAGTATTGGAAGTTTCACCTTAAATCTCCCTCATCTGTGTTTTGTTTGTTTTATGTTTTCCAGTTAACATTAGTAATGTGTATAAATACATGGCAAATTATTTACTGAAATGTTTTTAGCTAATAAATTTGGACGACAGATCATAAAACATTGCTGAAGGATGTGCAGAGATGATTTTAAAATACTTGCCATACAGCTAAAATCCCATTGTAAATTAGAGCACACAAGATTTATATGCGATTCTGCAGCGTGTTTTAACTCTATTTAAAGAAATGTAAGCAGGAAAATCCATTCTGCAGTTATTCAATAATGCAGTAGGTATCAATGTTGCTTTAATTTGTTGAGGCATCATTCTCCCTTTGTAGAGCCCTAAAAATAATGGTGTCGACACAGCCATGCCTTGTCTGGTCGGTGCTATTAATTTGTATTGGCCTGGTTAATTCCTATTAGCTTGGTCCCAGTGTATTGGGCTTTTGCATTGCTAATGAGGACACAGGCCTTTTCCTTTCTCCAGTTGCATCTGATAATTTGCTAATGGGTTTTCTTCAATCTGTTCTGGAAGTTTTTAAGTCTTTTTTAATTTAGATCAGAATATTTCTACAAGAGTCCTTGGTATCTTATATAACAGCATCCTTCTTCATGGTGCACCCATGCCCAAGGGATTTTAGTGCTTGGCTGATCCCACTTCTCCATGCTAAAGCCCTGCCTGCCCTCCTTATCCATCCTCTGCTGAATCCTGACAGTAACCCTCTCCTCGGACTGTTCTGTATTTAAGGGAATTGCTGTTTTTAAGTTGCAGCATTTGTGAAACAAGGGGTTCCTCTGGGAACACCGATGTCTTTGGCTCAGTGTTTTGGAGAAGTGAGCTGTGTAATCTCTGTGAGAGAACATACTCGGTCTGAGAAATGTTCCCTCTACCCATTGCATCTTAATTCAGCCAGCACATCTTTCTGAAGCCCAGACGAGCACAGTGTCACAGGGTATGTCATGAAAAAGCAGCCCAAGGCAGATGCAGAGCCCAATCTGTAGGTATTCCCCTGCATCCTGCTGCTGCTGGGCCACACTGCTGGGCACTGGGATTGCATTGGTCGTGGCTGCAGGGCTCAGTGTCTGAGCTGGCTTTGCTCATTGCAGCACGTCAGGTGATACACTGGTGAGTGAAAAGAGCATTTAGAAACGGTGCCAATCTTCTTGTCTCCTCACCTAG
Seq C2 exon
GCATTCAGCATTGTGTTCCAGAAAGCCATTGAGAGGGCATCTCCTGATGAGAGCCTCCAGGTGCGAGTGTTGAACCTCATAGACAGCATCACCTTCTCTGTGTTCCAGTACACAACCCGGGGGCTGTTTGAGTGTGATAAACTGACCTACACAGCACAGGTTATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]