BtaINT0052329 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105577667-105582014:+
Coord C1 exon
chr11:105577667-105577839
Coord A exon
chr11:105577840-105581944
Coord C2 exon
chr11:105581945-105582014
Length
4105 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
CGGTTTCCATTTCCCTGCAGGTG
3' ss Score
12.35
Exon sequences
Seq C1 exon
GGCCAGTGACCAGCCCTTGAAAATCATTAGCAGCGACTCCAAAGGGCAGCTCCACCTCCTGAAGATCCTCGAGGCGGGGCCCGGATTGCAGGCCGTGGTCACCTGGCGGGCCCATCAGTTCGAGGCCTGGGTTGCTGCTTTCAATTACTGGCAGACGGAAGTCGTGTACTCAG
Seq A exon
GTATCCTCCGCTGAGCGCCCCCCTGAAGACTTGCTGAGGGTGAGGGACGGGAGGGAGCAGAGGCGATGCAGGTCACGGGGCAGAGGCTGAGCTGGTGCTCACGGAGCTGTCCTTGGAGAGCGAAGCGCAGTTTGCCCAGGTACCGCGGGCTCTCGGGTGGCGCTGCTCCCCTGTGGGAGCTCCCCCGACGCTCATTCCCTGGGAGGGGTCCTCGCTCTCCTTCAGAAGTCCTGTTGGAGAACCTTGCTGCCCGGTCGTCTGGGTCAGTGCTGAGCTGTCATGTTGGGTCTTAGGCTTGCCTGTCCCCTTTTGGAACGGCTTCCCTCCCAGGTCAGGCCGGCGGCAGGGAAGACGGGCTTCCTGGTGCTGTGCGTGGTGCGTGTGGACGGGGTGGTGACGTGGGCACCGGGAGCCCCTTCCACCCTGATGACCGCGGAGGGCACAGGGCTCTGAGGGAAGACGGCTGAGGGCTGCGGAACCCGCAGAGGCCGGAGAGCAGCCGAGGCCTTGTCTCCTGTCTGGGTGCCGGTGGCATGCCACGCTCACCATGAGCGGTGCGGCCCCGGAGCCTCGTGTGGAGGAACAGCGCGCTGCCCAGCCCAGGGAGCAGGTCCACGGGCCTGCCTGGTCGTACCCCGCATCCCTCCCGGGCGTCGAGGCTGCGCAGTCCAGGCGCCGCTTCTCCCTGCAGCCACGCACCCTCCGCCCCGTGGGCTCGGCCCGCGCCAGCACGCCCTCTGCTCCGCACTCCTCCTGCGCCAGCACGCCCTCCGCCCCGCGGGCTCATCCTGCGCCAGCCCCGCCTTGGCTCCGTGCTTGTCCCGCGCCAGCCTGCCCTCTGCTCCGCGGGCTCGTCCCGCGCCAGCGCGCTCGTGGTCCCGCCTGCGTCCTCTTCTCGCTCTGCGTTGTGGCTCTCCTGACTCCGTTACCGTGTCTCCACAGACACTACGCTTCGCTGGTGGGAGCAGACCTTTCTTCTGAGCTCTGGCTGCGTTGTCTTGCCAGCTCCCCGCGCTCATGCTGGGGTGCTCGCCCGCGCTTCCCTCCGCGGGCTCCGGCCATGCCTGTGCTCCCGTGTGGCCCTGCCACGCCCTGCGCCCCGGGACAGGGTCTGGGCGCCCAAATCAGATGTCTCTGTCCACTCACCCCTTCTGAGAGTCTCTGTCTTGGTTTTGTCTTCTGAGCATTTCTCAGAATTTGCTGTATCTCTCTTACTCTCTTTCTGCTTGTCAGGACTACGGTCCCATGCTGTGGTCACGGCAGAGCACCGAGCAGTGGCCTGTGTTCATGCTCAACCTCTCCTGCCCAGCCTCCCATTCAAGGATAGAGCAGGTGGTTGAACACATGAGTTTCTTGCTCGCGCGGTCCTGAGCCTTCTGCAGCTTCCACCCAGGGTACCCAGCAGGGCCCCGGGTCTTATGTGACTGGGTTTCTGCCTACCTGGCTGGCCCTGTTTTGAGTGATTCTTCCTTGCTCTTAGTTTTCTTTTCCTCAACTCTTCTATGTTTTCTCTAATCTTAGTTTAATTTTTCACAGGTTAATTCTACTTTTCTGGCAGGGCCCAGCTTAAAATCTTGTCTTTAGAAACACTGTATGTTCAGTCCCTCGCCATTGGTCTCATGGCACCCTGTCCTCATCCTATTTATTAATTTTTTGTCACATCACAAGGCACATGGGATCTTAATTCCCTGACAGTGATCGAACCTGCATCCCCTGCATTGCAAGGCAGATTCTTAACCACTGGACAGTCAGGGATGTCCTCAGACCACTTATGATTTTGTGTTTAATGCTTATTTTCCCCTGAAAGGAGATCTTTTCTGGAGTTTTTGCTGTTGCACCCTTGAACAGACTCAGGGAGAACAGTAAAGACTTGATTTTTTGAGCTCTTGTTCATGGATTAATTCTTCTGCCTTGAGGCTTAGTTAATTCAAGCCACAGTGGAGTGAGACAATGTTTTAACAATTCGGGATCAATTCATTCATCCAACAAGTGTCTGTTGAGCACCTGCCACATGCCGAGCACTGTCCCAGGGGCTTGGGACTGTGATTTCTGTGAGGAAAACCAAGTCCCTGCTTTCACTGAGCTTCCAGTGCTTGGTGGAGACAGACAGGGAATGCTGAGTATAACGTGCTTGGTGGTGAATACACTTTGGAAGGAGGAAGGTGGGACAGGCACGGGTATCAGGTGCCGCGGGTGGCACAGACTGTCCTGCTGTGGAGCCTGTGAGTCTCACGTAGTTAGTATGGAGCAGGAGGCAAGGGGTCACGGAGACAGGGCGCTGGCTGAGGCCCCGGGAGCACGCCGGCATTTGCTCAGAGTGGAAGGGAGCCATTGTGGGGTGTCGGACAGAGGAATGTTTCCTGACGTAACATTTTAAAATTTAAGAGGATCCTTATCATTCTAATGAAGGAAAATGAAGAGGAACTAAAGAGGCTGTTGATGAAGGTGAAAGAGAAGAGTAAAAAAGCTGGCATAAAACTCAGCATTCAAAAAGCAAAGATCATGGCCTCTGGGCCCATCACTTCCTGGCAAATAGATGGGGGACAAAAGGGGAAGCAGTGACAGACTTTATTTTCTTGGGCTTCAGAATTGTTGCAGACAGTGGCCGCGGCCACGGAACTAAGACACCTGCTCCTTGGAAGGACAGCGTACTGAAAAGCAGGGGTGTCACTTTGCCAGCGGAGGTCGTATAGTCGAAGCTGTGGTTTTTCCAGTGGTCAAGTGTGCATGTGGACGTGAAAGTCGGACCAGGAAGGCTGAGCACCAACAATCTGGTGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACAGCAAGGAGATCCAACCAGTCCATCGTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGTTGAAGTTGAAACTCCAATACTTTGGCCACCTGATGCGAAGAGCTGACTCACTGGAAAACACCTTGATGCTGGGAAAGACTGAAGGCAGAAGGAGGAGGCGGCGGCAGAGGATGAGATGGTTGCACAGCATCACTGACTCTGGGCATAAATCTGAGCAAACTCCAGGGGATAGTGGAGGACAGAGGAGCCTGGCATGCTGCAGTCCATGGGGTCACAGAGAGTCGGACACGACTTAGTGATTGGACAACAGCCTTAGCTACTGTGTTGAGTGTAGACTGCAGGGGGGTGAGGGTGTGGGTTAGAGACCTACTGTATGCAGGGGAGGGATGAGGTGGGGGCAGTGGAGAGGAGGAAGGGTGGGAAACTGCTGCGTGAAGGTCGATCAGTAGGAGCTCCTGGTGGAGCACGTGGAGTGTGAGAGAAGGGAGCCCAGAGTGTAAAGAAACCAGAGCCAGTTCTCTTTACGGATCTGCCATGGAATGGCAGCTTGTATTTGAGGCTCACCCACAGCTCAGTGCCGGGATGGTGGCTTCTGCTGGTCCAAGGACACAGGTCACGTTCACCGCCGTCCCCATCTGTGGTGCGCCCAGAAAGTGCTGGTGGACGGGTGGTGGGCGGTGGGTGGAAGACGGTGGAGGAGCGCTGCGTTCAGCGCGGTTGGCTATGTGGTTGGTTTGCACCTTTCCATCCTCTCTGCCCGTCTTCCTTCAGGACGCTGTGCCCTTCTCTCTCGGTGTTGCTTTTCTTCAAAGACTGGCTGTGCGTCAGGGCACCGACTCCCCTCTTGTTTCTGTCGCTTCAGTTTCCTCAAAAGAAGCCCTTTTCCTGCGAGGTTACCAGGGACCTTTCTCTTTAAAACACACGGAGATGTGTCGCCAGTTGCAGGCATCTGCGGAGCCTCCTGCAGACACGTCTGTTCCGAGCACTCGGATGTGGCCACGCTGGCTCCAGGCGGCAGGAGCCGGAAGGGTTGAGTCCGTGTGGCTGGTCGCTCTGCCCCCGTGCCTTTGTGTGCCCTTCTGCGGGTGTGGCCCCCGTCTTCCCCTTCTTCCCCACAGCGTGTGAAGGCATGGTGGTGGCACAGCTGGCTGCCTCTGGGGCTCGCGTGCCTGTGTGGGAACACCCTCACAGACGTGATTGCGCCCTGAGAAGCGGCCGGTGCCCATCCTCAGCGTGCCTCCTGGCCAGCGGGGGCGGTTTCCATTTCCCTGCAG
Seq C2 exon
GTGGGGACGATGGCCTCCTGAAGGGCTGGGACACCAGGATGCCCGACACTGCTGCCTTCAGCAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(11.1=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development