GgaINT0124219 @ galGal4
Intron Retention
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1576506-1577231:+
Coord C1 exon
chr17:1576506-1576678
Coord A exon
chr17:1576679-1577158
Coord C2 exon
chr17:1577159-1577231
Length
480 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGTGTTTTGTCTTTGTGCAGGAG
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTCTAGTGGATGTCCTTTGAGAGTGATCAGCAGTGATTCAGAGGGGAAGCTGAATCTGTTCTCCATAGATGAATCTGCGCCTTCTGTGCACGTCCTGAACCAGTGGGAGGCTCACAAGTTTGAGGCCTGGATTGCTGCTTTTAATTACTGGAACATTGATATAGTGTATTCAG
Seq A exon
GTCTGTAAGCGCTGGGGATTTATTTGGGGGTATTGGGGATGGCTCACTTTGTTTAGGAGAGTGTGTTCCTCGGGATTATACTTTGCAGAGTTGGGTGTGCTGCTTCCCATCACGTTTCTTGTGAGAGCCGGGGCTCTCTGCTAGGGGAAGTGATTGGGGTTAATTAGGAGAAACCATATCTTCTAAACTGCTCTTGGGCTGGCTCTTGGCAAAAAGTTGGTGATCCCTTGGGGCGTGCAGGAGATACAGAGAGAAGCAAAAAGGTCTGAACTCTTGAAGCTAAATTTTTCAATGAGCAAACAGGGGCATTGTTATTGCATGTGTCTTGTGTGGTGAGGAGTAATGGGAGTCTCAAATGAGGTCTGATATTTCTGTTAAATGCTCTGATATCCCAGGGCTGAAAAGCAATATCTCTGCTTCAGTGCCTTGCAGTGATCTTTTGAGGGGCGTTCAGGATAGCTGTGTTTTGTCTTTGTGCAG
Seq C2 exon
GAGGAGATGACAGCCTGCTGAAAGGCTGGGACACCAGATGCAATCCAGAGACTCCAGTGTTCACCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(20.0=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGTGGATGTCCTTTGAGAGTG
R:
CTCCTGCTGGTGAACACTGGA
Band lengths:
246-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]