BtaINT0052916 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021923 | DSG2
Description
Bos taurus desmoglein 2 (DSG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192172]
Coordinates
chr24:25933656-25934092:-
Coord C1 exon
chr24:25933955-25934092
Coord A exon
chr24:25933842-25933954
Coord C2 exon
chr24:25933656-25933841
Length
113 bp
Sequences
Splice sites
5' ss Seq
GTGGTAACT
5' ss Score
5.08
3' ss Seq
CTCCTGTTTGTGTTTTGCAGTAT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GAATACAGCAGCTACACTTTGATAGTAGAAGCAAGAGACGGCAATGGACAAATAACAGATAAACCAGTAAAACAAGCTCAAGTTCAGATTCGTATTTTGGACGTCAATGATAATATACCTGTAGTTGACAGAAACGTG
Seq A exon
GTAACTATTATTTTTATAACAAATGTGCCTACTTACATGTCAGCCATAACTAAAAATATATCACTTATGTTTGTGTTCCATCAGAATAAAAACCTCCTGTTTGTGTTTTGCAG
Seq C2 exon
TATGAAGGATCAATTGAAGAAAACAAAGCCAACGTAGAGGTTTTACGCATAAAAGTCTCCGACGCAGATGAAGTAGGCTCGGATAATTGGTTAGCAAATTTTACTTTTGCATCAGGAAACGAAGGGGGTTATTTCCACATAGAAACTGATACTCAAACTAATGAAGGAATTGTGACCCTGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021923:ENSBTAT00000029228:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(32.0=69.6)
A:
NA
C2:
PF0002812=Cadherin=PU(59.8=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAAGAGACGGCAATGG
R:
AACCCCCTTCGTTTCCTGATG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]