RnoINT0051407 @ rn6
Intron Retention
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15605078-15605492:-
Coord C1 exon
chr18:15605355-15605492
Coord A exon
chr18:15605264-15605354
Coord C2 exon
chr18:15605078-15605263
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACT
5' ss Score
7.53
3' ss Seq
GCTGTGTTTGTGCTCTGCAGTAC
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAACACAGCAGCTATTCCTTGACAGTGGAAGCGAGAGACGGTAACGGGCAGATAACAGACAAACCCGTGCAACAAGCCCAAGTTCAGATTCGCATTTTGGATGTCAATGACAATATACCTGTGGTGGAATACGGAACG
Seq A exon
GTAACTCCGTTTTATTGTAGCCTTACTGTCTCTTGACTCTCAACTAAAAATACGTTATTGCATTAATGAAAGCTGTGTTTGTGCTCTGCAG
Seq C2 exon
TACGAGGGGGTAGTGGAAGAAAACCAGGTCAATGTAGAAGTCATGCGGATCAAAGTGACCGACGCGGATGAAGTGGGCTCGGATAACTGGCTAGCAAACTTTACGTTCGCATCAGGAAATGAAGGGGGCTATTTCCACATCGAGACTGACACACAGACTAACGAAGGCATCGTGACCCTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526:ENSRNOT00000022270:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(32.0=69.6)
A:
NA
C2:
PF0002812=Cadherin=PU(58.7=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGACAGTGGAAGCGAGAG
R:
CGGTCACTTTGATCCGCATGA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]