BtaINT0055540 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046188 | ELA2
Description
Bos taurus elastase, neutrophil expressed (ELANE), mRNA. [Source:RefSeq mRNA;Acc:NM_001105653]
Coordinates
chr7:44988905-44990110:+
Coord C1 exon
chr7:44988905-44989046
Coord A exon
chr7:44989047-44989879
Coord C2 exon
chr7:44989880-44990110
Length
833 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CCCACCACCCTCCTCTGCAGCTC
3' ss Score
8.31
Exon sequences
Seq C1 exon
GAACTTTCGATCGGTGCGCGTGGTGCTGGGGGCGCATAACCTGCGGCGGCAGGAGCGAACCCGGCAGATGTTCAGAGTCCGGAGGGTCTTTGAAAACGGCTTCGACCCCTTGAGCCTGCAGAACGACGTCGTGGTTCTCCAG
Seq A exon
GTGCGCGGGGGGCGGGGCGGGCAGGGCAGGTGCAGCGCCCTGAGAGGCTTGGGGAGGGGGGGAGGGGCAGGAGACTAGGGGGTGCGGCGGGCGGGGGCAGACCTGGTGTCCCCACTAATCCCGGTGCTTCAGTCACCCCGCTGTGAAATGGAGAAGTACACCCCCGCACCCCGCAGGGCTGCCAGAGATTAGATAAGACAGCCAGAAGCTCTGAGCAGCTGTCTTTGCTAGCGGTGGGCACCGATGGCCTCCCTCTTTGGGAAATGGGGCAAAATTACCTACATTCGGTGGGTGGGAGTCTGGAGGCAGAAACCTACCTTTCCCCTCTGCTTGCACAGCTATGATTATTCTCTGAGAATGTTCTAGAACAAGGGCCTTATGGTCGCTGGTGTGGCCCACGGTTTGTTCTGTTGAACACCTACTGTTTACTGCACCCAAGACACGACACATTCAGGGACTTCCCTGGTGGTCCAGGGAAGACTCTGCACGCCCAAATTCAGGGGGCCCAGGTTCAATCCCTGGCTGGGAAACTAGATCCCGCATGCTGCAACTAAGACCCCACGAAACCAAATAAATAAATAAATAAATATATATATATATATATATATATATATATAAAAGACACGTCCAGAGACGTGGCCTCGGCCATGGTGGTTCCTCCCACTTTACAGACGGGGAGCTCGATGGGACGCATGCAGAGGGTGGGCGTCCTGCTCTTAAACACCCCGGGACAATGGTAGAGCCTCCGCGGGGGAACCTGGCCCCAGAGTCACAGCCGTGGCTCGCCGCCGCTCCCCCGTGACTGCTTCATACCCCACCACCCTCCTCTGCAG
Seq C2 exon
CTCAATAGGATGGCCACCCTCAATGCCAACGTGCAGGTGGCCCGGTTGCCTGCCCAGGACCAGGGCGTGGGCGAAGGTGTTCGGTGCGTGGCCATGGGCTGGGGCCGTCTGGGCACGAACCGGCCACCGCCCCAAATCCTGCAGCAGCTCAACGTGACCGTGGTGACTGGCCTCTGCCGCCCCACTAACGTGTGCACCCTGGTGCCACGCCGGCGTGCTGGCATCTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046188:ENSBTAT00000063577:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(35.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTTCGATCGGTGCGCG
R:
CACCAGGGTGCACACGTTAG
Band lengths:
346-1179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]