MmuINT0056733 @ mm10
Intron Retention
Gene
ENSMUSG00000020125 | Elane
Description
elastase, neutrophil expressed [Source:MGI Symbol;Acc:MGI:2679229]
Coordinates
chr10:79886983-79887799:+
Coord C1 exon
chr10:79886983-79887124
Coord A exon
chr10:79887125-79887565
Coord C2 exon
chr10:79887566-79887799
Length
441 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCCGTGTCTTCCACTGTAGCTC
3' ss Score
9.29
Exon sequences
Seq C1 exon
AAATTTCCGGTCAGTGCAGGTAGTGCTGGGAGCCCATGACCTGCGGCGACAGGAGCGCACTCGACAGACCTTCTCTGTGCAGCGGATCTTCGAGAATGGCTTTGACCCATCACAACTGCTGAACGACATTGTGATTATCCAG
Seq A exon
GTGGGCCTGCCAGTTCAGGAACCTGAGCCTCGTGCAAAGGTCCCGAGGTCAGCTTAGGGAGAGTGCACTGCAGAACAGGCTGCAGGACAGGTACACACTGGGTCAACTGCAGTCATCACCCTCTGAGCCTGTTTCCAGCTCAGCACAGTGGAGAATTAACTATTCTGTGGGCTGAATGTTGAAGGCTTAAATGAGATAATATACAGAAAGCTCTGAGCAGTATTCAACCAACAAACTCTTATTTGTGCCTTTCCACACACTGACCCTGAAGCTTGGGGAACTCTTGGAAAATACTCACGTCTTCCTCTAGTTCTTAAATTTTTTCACCACTTGATGGTCAGGTACTAAGGAAAGTGGGGAGGGTTCTTATAAACTGTGCTCTGTGACTTCTTGGTGTTCTATGCCTCCCCCCCCCCCCCCCCCCCGTGTCTTCCACTGTAG
Seq C2 exon
CTCAATGGCTCCGCTACCATTAACGCCAACGTGCAGGTGGCCCAGCTGCCTGCCCAGGGCCAGGGCGTGGGTGACAGAACTCCATGTCTGGCCATGGGCTGGGGCAGGTTGGGCACAAACAGACCATCACCCAGTGTGCTACAAGAGCTCAATGTGACAGTGGTGACTAACATGTGCCGCCGTCGTGTGAACGTATGCACTCTGGTGCCACGTCGGCAGGCAGGCATCTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020125:ENSMUST00000046091:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(36.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGGTCAGTGCAGGTAGT
R:
ACCAGAGTGCATACGTTCACAC
Band lengths:
345-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types