BtaINT0055541 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046188 | ELA2
Description
Bos taurus elastase, neutrophil expressed (ELANE), mRNA. [Source:RefSeq mRNA;Acc:NM_001105653]
Coordinates
chr7:44989880-44990572:+
Coord C1 exon
chr7:44989880-44990110
Coord A exon
chr7:44990111-44990264
Coord C2 exon
chr7:44990265-44990572
Length
154 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CAATTTGTCTGGCTCCACAGGGG
3' ss Score
8
Exon sequences
Seq C1 exon
CTCAATAGGATGGCCACCCTCAATGCCAACGTGCAGGTGGCCCGGTTGCCTGCCCAGGACCAGGGCGTGGGCGAAGGTGTTCGGTGCGTGGCCATGGGCTGGGGCCGTCTGGGCACGAACCGGCCACCGCCCCAAATCCTGCAGCAGCTCAACGTGACCGTGGTGACTGGCCTCTGCCGCCCCACTAACGTGTGCACCCTGGTGCCACGCCGGCGTGCTGGCATCTGCTTT
Seq A exon
GTAAGTACCCTGGGTGCCCCCAGCCCCTACCCCACCCCCTCCCAGGCTGCTGTAGCCAGACCCCTGGAATATCTTCCCCACCCTGAAGGGCAGGTAGGTGGAACTGAGAGGGCTGGGCCGGGAACCCTAGCCTCCAATTTGTCTGGCTCCACAG
Seq C2 exon
GGGGACTCCGGCGGGCCCCTGGTCTGCAACGGGCTGGTCCATGGGATCGATTCCTTCATCCGTGGGGGTTGCGGCTCTGGGGTCTTCCCAGACTCCTTTGCCTCTGTCGCCAAGTTTGCCAACTGGATCAACTCTATCATCCGGCGCTACAGTGACGACGATGGCCCCTCTCTCCACCCCAGGGACCCCACGGGCAGGACCCACTAGAAAGGCTGTACCTGTCACGCCCCCTCACCTGCCCTTGGCTGGGCCCTTCCCATGAAGCATCACTCAGCATCTGACACAATAAAAACCTCTCTCTGTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046188:ENSBTAT00000063577:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(35.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATCCTGCAGCAGCTCAA
R:
TCACTGTAGCGCCGGATGATA
Band lengths:
255-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]