MmuINT0056734 @ mm10
Intron Retention
Gene
ENSMUSG00000020125 | Elane
Description
elastase, neutrophil expressed [Source:MGI Symbol;Acc:MGI:2679229]
Coordinates
chr10:79887566-79888215:+
Coord C1 exon
chr10:79887566-79887799
Coord A exon
chr10:79887800-79887916
Coord C2 exon
chr10:79887917-79888215
Length
117 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TGACATGGACGCCTCCACAGGGG
3' ss Score
5.26
Exon sequences
Seq C1 exon
CTCAATGGCTCCGCTACCATTAACGCCAACGTGCAGGTGGCCCAGCTGCCTGCCCAGGGCCAGGGCGTGGGTGACAGAACTCCATGTCTGGCCATGGGCTGGGGCAGGTTGGGCACAAACAGACCATCACCCAGTGTGCTACAAGAGCTCAATGTGACAGTGGTGACTAACATGTGCCGCCGTCGTGTGAACGTATGCACTCTGGTGCCACGTCGGCAGGCAGGCATCTGCTTC
Seq A exon
GTAAGTACCCTCTGCAGCAGCAGGGATAGTAGTCGGACCCCAGGGAGGACTTCCCAGTGCTGGAGCATGGGTAGGGGATGACTAGAGATCCAGCCTCTGACATGGACGCCTCCACAG
Seq C2 exon
GGGGACTCTGGCGGACCCTTGGTCTGTAACAACCTTGTCCAAGGCATTGACTCCTTCATCCGAGGAGGCTGTGGATCTGGATTGTACCCAGATGCCTTCGCCCCTGTGGCTGAGTTTGCAGATTGGATCAATTCCATTATCCGAAGCCATAATGACCACCTTCTTACCCATCCCAAAGACCGAGAGGGCAGGACCAACTAGGACCTGTCTGCACTCCCACCCCGCTCCCCTTGCTCCCTTGCTCCCCCCTCTACCAGAGACCTCTCCATTTTACTACAATAAAAGCAGCCTTTGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020125:ENSMUST00000046091:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGTGACAGAACTCCATG
R:
ATCCAGATCCACAGCCTCCTC
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types