BtaINT0055755 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85533734-85536667:-
Coord C1 exon
chr10:85535219-85536667
Coord A exon
chr10:85534031-85535218
Coord C2 exon
chr10:85533734-85534030
Length
1188 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCTCGCTCCCCTTCTCCAGGAT
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATGAACCTCCAGGCCCAGCCCAAGGCTCAGAACAAGCGGAAGCGTTGCCTCTTTGGGGACCAAGAACCAGCTCCCAAGGAGCAGCCTCAGCCCCTGCAAGCCCCCCAGCAGCCCCCGGCCCCTCCACAGTCCAGAGTGAAAGAGGAGCCTTACTTTGCCCACGAGGGTTCAGCAGGGGCTGCTCCCCACTCCCAGCCGGTGGAACTGCCCTCTTCCAACAGCCTGGCCCTACTCAACTCTGTGGTGTACGGGTCTGAGCGGACCATGCTGTCCCAGCAGGTGGGCTCGGTCAAGTGGCCCAACTCTGTGATGGCTCCAGGGCGGGGCCCGGAGCGGGGAGGGGGTGGGGGTGTCAGCGACAGCGGCTGGCAGCAGCAGCCAGGCCAGCCTCCACCCAACTCGACGTGGAACCGCCACAGCCTGCCCCTCTACAGCGGACCCAAGGGGAGCTCTCATCCTGGCATGGGGGTCGCTACCTACTACAACCACCCGGAGCCTCTGAAGCTAGAGAAGGTGGGGGGGCCGCAACTGGACCGCTACGGAAACGCTGTGCGGCCCATGGTGCCGCCCAAGGTGCAGCTGGAGGTGGGGCGGTCCCAGGCGCCCCTTAACTCTTTCCACATGGCCAAGAAGCCCCCAAACCAGACGCTGCCTCTGGAGTCCTTCCGGCAGGCGTTCGGCCACCAGGTGAACCGGCAGGTCTTCCGGCAGGGCCCGCCGCCCCCTAACCCCGTCACGGCCTTCCCGCCCCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCCCTGCCCCAGATACAGCTCTTGGAGAACTTTTACTCCATGCAGCAGCCACCACCCTCTCAGCAGCCCCAGGACTTTGGCCTGCAGCCGGCCGGGCCACTGGGGCAGTCCCACCTGGCCCACCACAGCATGGCACCCTACCATTTCCCCCCCAACCCTGACATGAACCCGGAACTGCGCAAGGCCCTCCTGCAGGAGTCAGCCCCGCAGCCTGTGCTACCTCAGGCCCAGATCGCCTTCCCCCGCCGTTCCCGCCGCCTCTCTAAGGAGGGCGTCTTGCCTTCCACCGCCCTGGATGGGGCCGGCACCCAGCCCGGGCAGGAGCCCGCCAGCAACCTGTTCCTACATCACTGGGTCCCGCAGCAGCCGCCACCCGGCCCACTGGGGCAGCCCCATCCTGAAGCTCTGGGGTTCACGCTGGAGCTGAGGGAGTCGCAGTTCCTGTCTGACGGGGAGAGACTGGCACCCAATGGTCGGGAGCGGGAGACTCCCGCCATGGGTGGTGAGGAGGGCATGCGGGCGGTGGGCACAGGGGACTGTGGGCAGGTGCTACGGGGTGGGGTGATCCAGAGCACCCGACGGCGGCGCCGGGCATCCCAGGAGGCCAATTTGCTGACCCTGGCCCAGAAGGCAGTGGAGCTGGCCTCGCTGCAGAACACAAAG
Seq A exon
GTGAGTCGCAGGGGCTGCGGGCAGACCCAGCAGAGGGCAGGGTGAGTCGTGTCTAGGGCCAGGGGAGAGCAAGGGCCTCCAGGTCCACAAGGTCAGTGTTCTTCCTTCATTGAAGGAAATGAAAGAACCCATCTATTTCGGAGAGTTTTGAACTTCCCGCATGCAAAGAGTCTCTATGGATATGTAGGTGTATCCATACTTGACGGGAAGACGGGTTTTATTCACATGCAGGCTTGCAGGCAGGGCAGTGCAGTGCCCCTTGCGGTTGGTTGCCTTCTTCATTTGGGTCTTGCATTGTTGGGAGTAGGGGGAGGTGAAACCATTTCCAGATCCAGTATGCTAAAAGACAAGAATGTGGGCATGGTTACACAGGGGGTAATACTTATCAAACTGCATCAAACTATAATTAAAAACAGGTGCAATTTGTTGCACGTTAATTATCTTGCAAGAAAGTTGATTTGAAAGAAAAGACAGTCTAAACAGGGAAGAAGAATGAATAGAATTTGAGCACCTGTGTTGTACTCGGAGTTTCTTATCCCTGATCACAGTAGTTTCTCATCAAACCTTATGGGAGGGATGCTGGGATGCTGGCATTTACCCCATTTTATTGCTAAAGAACCTAAAGCCCAGCTGGGATTTCCCAGGGTCATAAAGGTACGATAGAAGCTAGTATCTGACTCCAAAGCCACTGTTTGCCCCTTCCTTCACAAGAGGTCTCAATCCCCAAAATATGTATAGCCCGACTTTTGTATAGGAGGCTGTAGCATTGACTTCAGCCAGCTGCCAGTGGGGAAATAGATAATGAAAACCACCCGTACTTTGCCAGAGGTTCCTTGCTTATTTTCTTTTCAGAGATATGTTTTAAGTATGCAGATGCTATTTCACATGCCACTCACTGTCTAGGCCAAACAAAACATGTCTGTGAGCCATTTGTGGCCTGAGATGGCCATCTGGGGACTCCTGCTTCAGGCCAAAATGGGAGAACTTGGCAAAAGGGAGGTTATGGAGAATATTTGGGAATATGATGGGGGAAAGGTGGTGAGGGAAAGGCCACGTTGCCATGGACCATTGCGAACCATCCTAGGTGTTTGAGCCTGAGTCCAATGGGACTAGGGGTCCCAGACCAGCAGATCAGGACTTACCTTCTAACCATCTGCGTTTTCATTTCCTCTCGCTCCCCTTCTCCAG
Seq C2 exon
GATGCCAGTGGCTCTGAGGAGAAGAGAAAAAGTGTGTTGGCTTCAACTACCAAGTGTGGGGTGGAGTTTTCTGAGCCTGCCTTAGCCAAGCGAGCACGAGAGGACAGCGGGATGGTACCCCTCATCATCCCAGTGTCTGTGCCTGTGCGGGCAGTGGACCCAACTGAGGCAGCTCAAGCTGGAGGTGTTGATGAGGATGGAAAGGGTCCCGAGCAGCACCCTGCTGAACACAAGCCGTCAGTCATTGTCACCCGCCGGCGGTCCACCCGTATCCCTGGGACTGATGCCCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTACATCACTGGGTCCCG
R:
TCTTCTCCTCAGAGCCACTGG
Band lengths:
349-1537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development