RnoINT0054395 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107655775-107658744:-
Coord C1 exon
chr6:107657080-107658744
Coord A exon
chr6:107656075-107657079
Coord C2 exon
chr6:107655775-107656074
Length
1005 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCAATCTCCCTCTTACCCAGGAT
3' ss Score
7.09
Exon sequences
Seq C1 exon
GCTCCAGGACCTGGTGCAGCATCATGACTGGGGAAGTGTAGCTGAGCTCAAGACTCTCCCTAGAAGAGGAAGGACCAGTGGACGTTTCTCGGCTCTTGCCTGAGGGCTCCTGAGTTTTCCTCTGCCCCTCTTCTGCCTTCCCTGGCTACTGGACTGGGGCCAGGCTTCCAGCAGGACCTTCTCCCAAGGGATGGGCATCTGCTGAAGGACGTCTCATTGTCAGGCTTAGCTGGCCACACCATGAACCTCCAGGCCCAGTCCAAGGCTCAGAATAAGCGCAAGCGTTGTCCTTATGGGGACCAGGAGCCAGCTGCTAAGGAACAGCCACCACCACTGCAGGCTCCACCACAGTCCCTCAGAGCTAAAGAGGAACAGTACGGTCCCCACGAAGGTCCCGCGGGGGTCGCCTCCACCACCCAGCCTGTGGAGCTATCTCCTCCCAACAACCTGGCTCTGCTGAACAGTGTGGTATATGGATCTGAACGGACCACAGCAGCCATGCTGTCCCAGCAGGCCCAGGTCAGCTCAGTAAAGTGGCCCAACTCCGTGATGACTCCAGGGCGGGGCCTGGAGTGTGGGGGAGGTGCAGGCATCAGCGACAGTGGCTGGCAGCAACAACCTGGCCAGCCCCCACCCCACTCCACGTGGAATCACCTGCCCCTCTACAGTGGACCCAAAGGGGGCCCTCATCCAGGTGTGGGGGTCTCTCCCTACTATAACCACGCCGAGGCACTGAAGGGGAACAAACCTGGGGGTCCACAGCTGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCCACAGAAGATGCAGCTGGAGGTGGGGAGGCCCCAAGCGCCCTTGAACTCTTATCATTCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGCCAGGTCTTCCGGCAGGGCCCTCAGCCCTCTAACCCCACCACCTCCTTCCCGCCCCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGGCAGCCCTGCCCCACATGCAGCTATTTGAGAACTACTACCCCATGCATCAGCCGCCTTCACAGCAGCACCAGGACTTTACCCTGGCACCGGGCGGGCCCCTGGGACAGACTCACCTGCCTCACCGCGGCATGGCCCCCTACCCGTTCCCCCACAACCCAGAACTGCGCAAGGCCCTCCTGCAGGACCCTGCTTCACAGCCCGTGCTACCTCAGCCCCAGATGGCCTTCCCGCGCCGCTCCCGCCGTCTCTCCAAGGAGGGGATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGACAGGAGCCCACGAGCAATCTGTTCCTCCATCACTGGTCTTTGCAGCAGCCGCCGCCAGGCGCCCTGGGGCAGCCCCATTCCGAAGCCCTGGGATTCCCGTTAGAACTCCGGGAGTCGCAGCTGCTGGTGGATGGGGACAGACTGGCACCCAATGGCCGAGAGCGGGAGGCTCCCGCCGTGGGTAATGAGGAGGTCTCGAGGGCAGGGGGCCTCGGGGACTGTGGGCAGATGATGCGAAGCGGGGTGATCCAGAGCACAAGGCGGAGACGCAGGGCGTCCCAGGAAGCTAATTTGCTGACCCTGGCCCAGAAGGCGGTGGAGCTGGCCTCTCTGCAG
Seq A exon
GTGAGAAAGGGCGGCATCTGTTGGGGGTGGGGGGTGTTTATAGGGTAGGTCTCTTTCAATTATTAAAGGAAAGGAAAGCTCTTTATTCAGAATTCCCCTGCACGAGGCACCCATATCTGCAGGGACGCCGAGGTTTCCAGGCGCGGACGGTTGGAGGGTAGGAAAGTCCTTGATGACTTCTCCCTGTGGAACTTGAGGACTGGGAGTAAGTAGCAGGGGGTGCTGAGATGCAAGAGAGTGCACTGGTGATTGCACACGATGCAATCAATGCACATCAAAATACAGAACTGTAGTCTGGAGTAGGAAGTCACATTGCAATAAAGTTCATCTTTTAAAGTCAGAAAGGAAGGAAAAACCAGTCAGACTTTGAGCGCTTGTGTTAACCTTGGATTTTTTTTTGTTTTATTTTGTACTTGCTCGAAAGTGACTTCTCCTCAAACCTAATTGCAAGGGTATGGATGTCACCTGTCCCAGGCTCCTGTAAAGAGGCTGAGCCACTTAGGAGAGACATTGTCCAACCCCCACCCCCACCCCCATTTGATCAGCATTCACTCTCTGCTTCTTGAGAAGCTGCAGCCTCTGTTGCCTTAGGTCCAGGTTGACACACAGGAGGCTACGGAATTTTGAGTCTTCACTGCGGTCAGATAGCTGAGGGAATAGCTGCAAAGCCCTCCCTTCCTTCATTTTGCTACGGCGAGATGCTTGGTTATGTGCCACACCCCGTAGGCTAGATGAGACATCTGCAGGCCACCTGTGGACCGATGACCTCCTGGAAGCCGATGCTTCAGGCCAGGGTGGCACAACCAGGCAGAGGGAGGCTGAGGAGGATATCTGAAGTGTACAGGAAGAGGGATGGACGGTCCAGAAAAGGCCAGGCTGGCCGTCAAGGAGCAACCAGTAGGTGGCCGAGTTGCTGGGTTGAATGGTCATGGGATTCCTGGGTCAGGAAACAGGGGCTCATCTTCTGAACCTCACTGCCATCCCCCCAATCTCCCTCTTACCCAG
Seq C2 exon
GATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGCTGGCCTCAACTGCCAAGTGTGGTGTGGAGTTTTCTGAGCCCGCCTCAGCTGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTGCCCCTCATCATCCCCGTGTCTGTTCCTGTGAGGACCGTGGGCCCCACCGAGGTGGCCCAAGTTGGAGGTTCTGATGAGGATGGGAAGGGTCTTGAGCAGTTCCCCACTGACCACAAGCCGTCGGTCATCGTAACCCGCAGGAGGTCTACCCGAGTGCCCGGGACAGATACTGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.813
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGAGCAATCTGTTCCTCC
R:
CGCTTCTCCTCAGAGCCATTG
Band lengths:
355-1360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]