BtaINT0055756 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85518637-85520558:-
Coord C1 exon
chr10:85520346-85520558
Coord A exon
chr10:85518834-85520345
Coord C2 exon
chr10:85518637-85518833
Length
1512 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCTCTTTTGACTCTCTCCAGGCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
ACTTCCCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAATGAAGAGAGGCTAGAGCCCAAGAAGGAAGAAAAAGAGACCAGAAAGGAGGGGGAGGAGGAGATGCCAGAGACCCAGGACAAGGGGGAGCAGGAAGAGGGGCGAGAGCGAAGCCGGCGGGCAGCGGCTGTCAAAGCCACACAGACACTACAGGCCAATGAGTCG
Seq A exon
GTAAGTGTGGCCTTCCCTGGGGGAGCCCAGGACCAAGGAGGATGGCTGGAGCTGGGCCTGGGGGTGTGGGAGGGAGGGCAGAACAGGAACATGACGATGATTGTCATCATCGTGGCAAGAAGTGCACTAAATATTTTACGCTGTTAACTCATTTAATCCTCATAAACCCAGGTAGTAGGTACTGTCATCATTCCCATTTTACAGATGAGATTGAGGCCCAAGATAAGATAGCTAGTAGGCAGCCTGACTCCAGAATCTGCTACTAATTTTATACTATCCTGCTTCTATATCTGAGACACAGAGGAAAGAGACTTTGTGAAAATCCAGAAGGTGTGTGGGAGGGTTGGGAAGCACTCCTGACTTATAGTTCAAACAGGGCTCCCCCTAAGAGAGCTGCGTCCTTGACAAAAGTGTCTGAAATGGAGCTGAGACAACGGGAATAACAATAATGGTGCCTCATTCATGTCTGCAAAGTGCTTTCCTGTTCATCATCTCATTCATTCCTCATAATAACCCCATACAGTGTTGACGCCCACCTTGCAGATGGAGGAAACTGGGTTCAGAGATGCTAAATGACTTTAGTACAGTGTTTTGTCCACAACATCACAGACTCAGAAGCAAGACACACTGGCCAGAGCTGTTCCTGGCCCCACAAAAGACAGGGAGAGGGCCCCACAAGAGACAGACCCCTGGGAAGGCTTTGCTGGCAAACTAGTATGAGAGTCTTTGTTAGTTTAACTTGTATACTTACACACTTGCAGGAAACCCCACTCCCAAACTGTAGACACAGTGGTTTGCTCCCTTCTGAGCCTTGGTAGCACTCCTTTAAGAGCTGTTCTTTATATACACACTCCACTGAGTTCTGCTGAACTTTTATGAATGCTTTTCTATGGGGTTTGATCCAGTGCATGCACGTGTGACTTCTAATGGACATCTGGGTCTCTCATATCCCAAGGTCCATGGTTCGCATACCCTGAGCAGCACCTCTCCAGGTCTACACCAGGTGTCTTGTGCTCTGTGTTACCTGCTTGGCATTTCCCATGGTGGCCCCTATTGTCATGAGCTAGCTGCCTGTGTGTCTGTCCCTTCAGACTGAGTTCTCTGGTGGCAGGGCCTTCTGTCCCCTCTATACTCTCTGAGTGACCTGACATGTTACATAGATTTGAAGATCATTTATGGAATAATGTCACAGACGAAATACTGAAAACGTGAAGCCATGTCATTAATTAAGCAAGACCCCTGTCAGATGCATCAGGAAGTCCTATCTTATAGAGCTAGGGCTGTCCCACCAAACTACTGTACCAGCAATTTGTAAAAACGGAGCTGGTCAAAGATGGATTGGGCTTCCAAAAAGACACTGAGTGCCTTGTCATTGGAAAGATTCAAGAGCATGCTAGGGGGCCACTGTGCAGGAGTGCGTGATCTTTACAAGCCTGCTGTTTGCTGATGTTCCAGAATTTGGGATTCTCATTTCCCTAAATCTCTCACCTCTCCTCTTTTGACTCTCTCCAG
Seq C2 exon
GCCAATGACATCCTCATCCTCCGAAGCCACGAGTCCAACGCCCCTGGATCTGCGGGTGGCCAGGCCTCAGAGAAGCCAAGGGAGGGGCCAGGAAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACTTTTAATAAGACCCAGAATCAGGAGAACACTTTCCCTTGTAAAAAATGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGAAGAGAGTCCCCAA
R:
GTGTTCTCCTGATTCTGGGTCT
Band lengths:
358-1870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development