HsaINT0020745 @ hg19
Intron Retention
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74181825-74188212:-
Coord C1 exon
chr14:74188000-74188212
Coord A exon
chr14:74186205-74187999
Coord C2 exon
chr14:74181825-74186204
Length
1795 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCTTGTTTGATTTTCTTCAGGCC
3' ss Score
9.38
Exon sequences
Seq C1 exon
ACTTCCCAAAAGTTCCCAAGGGTGCCTCTTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCCAAGAGGGAGGTGAAGGAGCCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGAGATCCAAGAGAAGGAGGAGCAGGAAGAGGGGCGAGAGCGCAGCAGGCGGGCAGCGGCAGTCAAAGCCACGCAGACACTACAGGCCAATGAGTCG
Seq A exon
GTGAGTGTGACCACCATGGGCTGAGCCCAGGGCAAGCAGGGTGGAGCTGGGCCTGGGGGCGTGGGAGGGAGGGTAGAGCAGGACTGTGATCCTCATTATAATCATAATAGCAGGAAATGTGTGAAGTACTTTGTGCTGTTAACTCATTTAATCCTCACTACCCTATGTGGTTAGGTATTACTGTTATTCCCATTTTATAGATGGGGAAATTGTGGCCCAAGATAACACAGCTAGTAGGCAGCCTGAATCCAGAGTCTGCGATTAATTTTTATACTCTACTGCTTCTGTATCTGAGATTCAGAGGGAAAAAGGTTTTGTGAAAACCCAGTAGGTATGTGGGTCACTGAGGGAGCATTGGTGGTTTGCAGACAGGGCTCCCCTAAGAGAGCCAGAGTCCCTGACAAGAATGAGACTGAGCTGAGACCATGGGAATGACAATCATAGGCCCTCAGGCATGATCTCTGCAAAGTGCTTTCATTTCCATTATCTCATTAGTTCCTCACACTGCAGAGTTAACCTCTACTCTGCAGATGGGGGAAAGCAGTTCAGAGATGCTAAGTGACTTGCCCCAGGTCCTTGGACTCCTAGTGCAGTGCTCTGTCCACCATATCACAGGCCAAGAAACAAGACTACTGGCCATAGTTGCTCCTTGCCAGGGAGAGTTCTCCCAGAAAGGGGTAAGGAGGGGAAGGGGTTTATTGGGGAGCTGCTGCTTTTTTAGAGTCTTTTTTTTTAGAAATGTATGTAGTAGGCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGTGGATCACCTGAGGTCAGGAGTCGAGACCAGCCTGGCCAACAAGGTGAAACCTCATCTCTATTAAAAATACAAAAACTAGCTGGGCATGGTGGTGCACGCCTGTAATCCCAGCTACTCCAGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGAGGCGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGACATAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGGAATGTGTGTAGTACACTCATGCTTACAGAGCTCCCATAAACTGTAAACACACGGCTGTGTGCCCACTTCTGAGCCTCGACCACCTGCACCAAGAGCTGTGCTCTGTGTAGCGCTCTACAGAGTTCTGTTGACTTTTGTGAACTTTCCCATGAGGGTGCCACTTCTGATGGCCACCCGGGGCTTCCCCAGCCGAGGTCACCTCTGCTCCCTCTGCTCTGCACTCTGACCCCTGCCCTTGCCCTGTTTGGTGTCCCTGCAGTGCGCTGTCCTGAAGTAGCTACCTGCGCATCTGTCCCTTCCACCAGATCCTCAGCTCTGAGGGCAGGGATGCCTGTGTCAACCTCTTTGTCCCTAGCATCTGGCCCATCACAGGGGCCTGAATCTCATTTATAGAACAGGGCATGAGCGGACTAAATGACAGAAAACATCAACAGGTAGGTGCTTCATTAACCCAGAGACCAAGATCCCCTGTCAGGCGCATCAAGGCCTCTAGCAGCTCGGGCTGCCCCACAGAATTACTCTAGCAGCAACTTTGTAAACGATAGAGCTGACCAGAGATGCAGAGTTGGAGGAGGCAATGGTCGTCATATCCCTGGAAGGACCCAAGTGCATGCTAGGTGACTGTTTGGCAGGAATATATATGACTTTTCAGGCCCCCGGTTCCCTGCGATTTTAGAATTCCAGATCTGCGCTTGCTCAGATCACTCAACTCTCCTTGTTTGATTTTCTTCAG
Seq C2 exon
GCCAGTGACATCCTCATCCTCCGGAGCCACGAGTCCAACGCCCCTGGGTCTGCCGGTGGCCAGGCCTCGGAGAAGCCAAGGGAAGGGACAGGGAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACATTCAGTAAGACCCAGAATCAGGAGAACACTTTCCCCTGTAAAAAATGTGGCAGGTAAGGTGGGCAGCGCTGTCCCCGCTGGGACCCCCGCGGGCTGGTGCGCGGAGGGGGCGGGGGTGGGGTGGAGGGGAGGGGGAAGAGGTACAGGCGGTGTCCGCCTCGTTTCTGGTTGGCTCAGCGGGTTTCTAGGGCTGTGACGTCATGGGGCAGCTTTCGGAAAATGACGCGAGCTGGCCGGCCGCGGCTGTGCAGCGTGGGGGTGAAGGTGAAGGCTGGGGCTCCTCGCGCACCCGCGCTGGGGGCCCCCGGGTGGGCTAGGCCGGTTCTGAGCAACCCCCACCCGGCTGCAGGGTGTTTTACAAGGTGAAGAGCCGCAGTGCGCATATGAAGAGCCACGCAGAGCAGGAGAAGAAGGCTGCAGCGCTGAGGCTGAAGGAGAAAGAGGCCGCTGCTGCCGCCGCCGCCGCCCACCAGCAGGCCCTGCGGGAGGAGAGCGGTGCGGGCGACAAGGGCTGAGCGCGGGAGCCAGGCTGGCCCAGTCCTGGGCCTCGGCCCTTCCCGCACCGCCGCCAGCGCCCGCAGACACCCTGGCATCTCAAGAGGGAGTGAGGAGAGGATTGCAGGGACTTTTCCCTGCGAAACAAATGAGACAATGACATAAACGGCTCTTTTATTTATGAAGGCCCTGGGAGCAGCGTTAAGGGCTCCAGGATCCAGCTCTCTTTGCATTTGGTCTGTCGGAAGCTGTCCTCGTGCTTTCCTGGACCGGGAGAGTCCCGGTCCCCTCGGGAGGGACTCCACCGCCTCTCACACTCCGATTTCTGCTGCTCTGCTGCCCCGCAGTCTTTTCCCTTTATTTGCTTCCCCCTCCTCCCCTCGGCCTCCAGGAAGCCACCGTGGCCGGCCAAGCACAAGCTCACCCACTTTGGAGCAGCATTTCTCCTCCCCAGAGGACCTCGAAGGCTGCAACGGCCCTGCCCCAAGCCCCAGAAAAAGAAACTCTTGGAGGGAGTCTGCGGGCTTCTCTGAGAAGGGGCGCAGCCTGACACCTGTGCTGTCCCTGCAGTCTCTAGGCCTGTCTGAGCTGCTCCCGTGACCGTGTCCTGAGTGGCCACCTCCTCCTTGGGAGGGAGGCCGCGGCAGGTACTCTCCCTTTGCTGCTTGCTGGCGGCCTTGCTAGGGCTAGAAAGTTTTCTCAGCGTTGGGGGAGGGGCTAGCGTTCTTGTCCAAAGCACTCATCCTGCTGCAGGGAAGGGAGCTGTACGGAGGCTGGAAGCTGCAGGGTTAGGCCCGAGAGAGCTTTTGACAAGCCTGGCTCTTCCTGCTTCCCACCTTTTTGGCTGAATACCTTTGGGTCCTGGAGGCTGCCAAGGGCGCTTCGCCTTGAGCAGGTCCCGGAGAGGCTCAGCCTGCCCCTCCTGGGGCCAGCCTCCTTGCCTCTGCTCTGACCTCAGCAGCTACACCTAACCCCACCGCACCCTACCCAGTGTCGATATCCACAACCCAGCCCCCAGGCCTGCACTTTGGAGATTTCTGGATCCTTCCCTGGGAGGGAGAGGTCTCCTAACTCGATTGGACAGGAGCCTTCATTCCTTGACTCGTGTCATTTGGGAGCTATTTATTTATTCTTAGTATTTAATTTTTAACATCCTCTCAGGGACCAGGGGCCTCCTGCTTTTCAGAGGCCCGAGTGCATTTATCCCAAAACGAGGCATCTTGACATCCCCTATCCCCACCCCCTAAATTCCCAAGGCCCTAAGGTCCCTCACCTGGTTGCTCTGGAAGCTCTTGCTGATAGGAATGATAGCAACACTGAAAGAGCGTGGGAAGGTGGAGGGTGTCACCAGACCCACACAGAGCAAGGGAGATTAAGGCAGTTCTTGCTGCCCCTTCTCTGGCTGTGCTTTGCCTGAGGGAAGAGTTGGCAAGAGGCCAGAATTCTAGTTTGGTTTATGGGGCCTGGATTCTGGCTTGAAGAAGCCATATTTGGCATGGGTGAAGTGAAAGGGCCAGGAGGTTCTGGAGGCCCCTTCACTTCCAGTCCCATAGCGGGGCTCAGCTATTTTTCTGATCTTATTCAACTTTAGTTGTGCAAAAGAAATTCTAAGTGAATGCGCGTATGACAGGTCAACGTATTAGGAAGGAGCCAGAAAGTATTCATACTGCTACTCCTTATGAGATAGCCAAGAAGCATCATGTCAGTAACTGGGAGTGGAGAGGGAGTTTTGTTTTGAAACTATGCAGGTATTTTTCAGCATCCATTTGTACATTAGTATGGTTCTACAGGACCCCAGCTGTGGAAGTAACAAATTTCTTCTCCCTCCAGACTCTTGGATGACTACCTAGATCCCCAGCTTACCGGTTAGTTTCCTCCACAGGCTTCCATGAGCTCAGTGTCCCAAGACAGCAAAAATCTGGTATACCCTGTAGAAGCAGGGGGGTAGCAAATTTAGGCTCTCTTCGAAATTACTTGTACAATACGAGTGCCTTCGCAGCTTAGCCCCAAAGTGCTACTTATGTTTCCCAAGGTCTTTTCTATTCAAATCATATTTGGTTTCAGGCCCCTTTATGGGCATACGGTAACAGAAACCTCCATCATTCATATGAGACCCTTTTGTCAGTGGTAACATCTTGTACTTGGAAAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCATTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCGCCTCTTGGGTTAAAAGAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCACACACCACCACACCCAGCTAATCTTTTTGTATTTTTTTTTTTAGTAGAGACAGGGTTTCGCCATGTCGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGGTCCACCCGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCGTGAACCACCGTGCCTGGCCGGAAGTCTTTAAAAAATAAAGTGATTCTACTCTTCTAAGCTTACAGAGACCAGACCAGGTGAATGTAACTGGGGAAAATCAAGATGGTACCTCTCTGCATTATCCCGCCAGACACTGTATTTTATGCATTCATGTCTAGGATACAGTGTGAAAATTAAAAAGTTTAGAGGGCAGATGCAATTGTGGCAAGTGACCTGCCAATAAAGCAGGTGCAGCTATAGAAGCTGGCATAGGTATATCCTTAATGGTGCTTTCTCCCTGGGCTTGTCTTTTTGTTGTTTTTTTCCCCCTATATTCAGAGCTCCTTGAGAAGTGATAAACACCTCCAGCTTTCTAACATCCTCCCCACACCATCTCACCATATCCATCTCCCAGCATCCATCTGCATTCAGCTAAGGGCGGGAAACTGACCTAGTGCCTGTGTTGCAGACCATTTCTGAGGTCTCCACCATCCAAGGAGGCACAGCCGTCATTACTGTCCTCCATGCCTTCAGCAGCCCCCCTCACAGCTAAGGTACATACCACCCCTTCTGCCGCGCCTCCACCCCTGGCACCAAGGTCTTCTGCTGCTTATGTCTAAAGGGATCACCTATATTTAACTGCCTCAGTGACCTAACCTCTTTCTTCTCATGTGCCAGATGTTAAGATGAAGGAGGAATACAACACATACTCAAGCCTCAGCCTGTTTAGTTGTTTTCACTGGGGCTCGCTTTTCTGGGACGGTATTTATTATCAGACTGGCAAGCCTAACTCCATAGGTTTACAGGAAGTAGGGATATTTTTATAAAACAATTGTGTCCTCCCCACATTTTGCTATGTTAATATTTGCTTCTAACAATTTGCAGCTGTTTCACTTTTTCCTCATTTGTCTCTAAGTTGAAGGCTTTGTTGGAGGGGACAGAGCACAGGAACAGCCTTGACAGTCTGTAATTATTGTACAGATATTTTAATAGCATATAAATAAGTATATTCCTTTTATTTTGAAACAAAAATGATCAGACACTGCCTTTTGTGTGTTTGCTGCCTGTGGCATCCTTTTTTAAAAAGACTGTTACATATTAAAATAGTGTACATATATAAATATTACCTCTTTTGCTGTACAGTTGTGATAGAGACTGAAGATTTTATTTTTTGTGTGCTTTTTATAAGAAAAAAATTAATACACTAAAGAATCTTGCTGATGTGATTGTAATGTACCTATGTAACTTATTTACTTTTGAATGTTCTTCTGTATCTTTAAACCTTTTATTAAATAAGGTTTTAAAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-C14orf43:NM_001043318:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.986
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCACGCAGACACTACAG
R:
CTGAGCCAACCAGAAACGAGG
Band lengths:
354-2149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)