BtaINT0055757 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85517890-85518833:-
Coord C1 exon
chr10:85518637-85518833
Coord A exon
chr10:85518179-85518636
Coord C2 exon
chr10:85517890-85518178
Length
458 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCCCTCCTGTTCGGCTACAGGGT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCCAATGACATCCTCATCCTCCGAAGCCACGAGTCCAACGCCCCTGGATCTGCGGGTGGCCAGGCCTCAGAGAAGCCAAGGGAGGGGCCAGGAAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACTTTTAATAAGACCCAGAATCAGGAGAACACTTTCCCTTGTAAAAAATGCGGCAG
Seq A exon
GTAAGACGGCAGGCCAAGTCTCCACCGGAACCTGGCGGGTTGGCTGAGGTTGGAGGAGGGGCGGGCGGCCATTCCTACAGAGAAGTAGGAGGAGTCACAGCTTGCGCCTCGTCTCCTGATTGGCTCAGGGGGTTTCCAGGGCAGTGACGTCGCTAGGCAGCTTTTAGAAGAGGAATGATGTCACTGAATCGGTAGCCTTTGTTGGAGGGTGGGGCTAGGCCACGTGGCTCCTGGCAAGCCAGAAGGGCCAGGGAGCCCCTACTGCACGCACGCACGCACGCACGCACGCACGCACACACACACACACACGCAAGTGCTCACACACACACTCAGACACGTGCAAGTGCTCACACACACAGACACACACACACACTCAAACAGACACGTGCAAGTGCTCTAGCCCTATGGTCTCAGTGGGGGAGACAGACCTGACTGGAGCCCCTCCTGTTCGGCTACAG
Seq C2 exon
GGTGTTTTTCAAGGTGAAGAGTCGCAGCGCCCACATGAAGAGCCACGCGGAGCAGGAGAAGAAGGCAGCTGCCCTGAGGCAGAAGGAGAAAGAGGCCGCGGCCGCTGCAGCCACTGCGGCCGCCTCCCCGCACCAGCCGGCCCTGCGGGAGGAGAGCGGTGCGGGCGAGAGAGGCTGAGGCCTGGAGCTCCGGAGCCTGCGGAGGGAGAGATCGCGCGGACTTGTCTCTGCAAAACGAATACAATTCAATAAACGGCCCTTTTTATTTATAAAGGTCCCAGGAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAGTCACGAAGGGCAC
R:
GTTTTGCAGAGACAAGTCCGC
Band lengths:
345-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development