RnoINT0054394 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107636856-107637643:-
Coord C1 exon
chr6:107637447-107637643
Coord A exon
chr6:107637152-107637446
Coord C2 exon
chr6:107636856-107637151
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCCCTTCCTGCCCGCTGCAGGGT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCCAATGATGTCCTCATTCTCCGGAGCCACGAACCCAATGCCCCGGGGTCTGCCAGTGTTCAGACCTCAGAGAAGCCAAGGGAAGGGCCGGGGAAGTCACGAAGGGCTCTGCCTTTCACAGAGAAGAAGAAAAAACCGGAGGCATTTAATAAAACCCAAAACCAGGAGAACACTTTCCCTTGTAAAAAGTGTGGCAG
Seq A exon
GTAAGAAGTCCCTTCCTTGTCTTCACAGGAACCTTTTAAGGTTGGGGCAGGGACTTGGACGCAAGCGGAGGATTTAAACGCTGCTGGGGGCGGGGCTCTGGGGATCTGCTTTTTGGTTGGCTCCTTGGGTTTCCAGGGTCATGACGTCGTGGGGCAGGCATAGTTTGAGGGGCGGAGCGACAAACTCCCGAGTGGGCGGGCTAAGGGTAGCGACTTGGGGGGGGGGGGACCGGCTGGGGTTGAGGGAGGAGAGTGAAGGGGTGGCTCTCACCCGAGCCCTTCCTGCCCGCTGCAG
Seq C2 exon
GGTGTTTTATAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAGGAGAAGAAGGCTGCAGCTCTAAGACTGAAGGAGAAGGAGGCTGCAGCCGCCGCCGCGCACCAGCAGGCGCTGAAAGAAGAGAGCGGCGAAGGCGAGAAGGGCTGAGGCCCTGCTGGATCCTCTTGCCGGGCTCCCCAGAACTCTGTACCTGGAACCTCTAGAGAAGGCCAGGAGAGGATCACTTGGACTTTGCTTTGCAAAACAAATCAAATAATGAAAAATAAACAGGCTCTTTTATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTGTTCAGACCTCAGA
R:
CCTTCGCCGCTCTCTTCTTTC
Band lengths:
294-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]