BtaINT0055764 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85521766-85524274:-
Coord C1 exon
chr10:85524186-85524274
Coord A exon
chr10:85521916-85524185
Coord C2 exon
chr10:85521766-85521915
Length
2270 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CAGTTTTGGCTTCAAACCAGATC
3' ss Score
3.74
Exon sequences
Seq C1 exon
GCTCCGACCAGTGGAAGATGGCTGAGAGGAAGCTATTCAACAAGGGCATTGCCATCTACAAGAAGGACTTCTTTCTGGTGCAGAAACTG
Seq A exon
GTGAGCTGGGGCTCTGTTTCAGGGGCAAGAGAAGGGCAGGAGCCCCCTGCAGGATTTGGGGGCTCCCTTTGCTAAAGAATCTGCCTGCAGTGCAGGAGGCCAGGGTTCGATCCCTGGGTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGAGCTTGGCAGGCTACAGTCCATGGGGTCACAGAGTCGGACACGATTTAGTGACTAAACCACCACCACCATCTGTTGGGGGAGGAGCAGCCTGCAATTACTTCCCAAGCCCTCTTAAAATAGTTAGGTCAATGCCACTTAATAGCTTCAGAGACATTTTTCTAAACAAAACAAGAAGGGATATGATCAGACCTTTTTCCCCCCTTGGTTCTAAGCCCCTTCCCTCATCTTAGGGTAGTGTAGCCACACCCTGAAGTCTCACTCCAGAGTGGCCTGAGTGGGCACCAGACCCAGTAGCACTGAACTTAAAATAGTGACTTGCCTAAAGGGAAAGAGGAAGAAGAGGAGGGTTGCAGGCGGAGGAGAGCCATCCCGAGGCGCTGGAGTACTTCAAAGGCCGCAGTTAGTATGTGGGAGGAGAGGTCACCCTGAGAGCAGGGGCACCAGAGCTACAAGTGACTGGGGGGCCTCTGCCCACTTCCTGTCAGGCTGGGGCGGCCTGGGGCTTCTTTCCAGGAACTCAGCTGACGGAGTAGAGGAGACCCAGGCCTAATTTTCCTAGATTTCTCTTGTCCTCCCGGCCCTGTGTTCTTGGTGAGAGTGTTCTGCTAATCAGAGGACTTGCGCCTTCCCACCAGCTCTATGTCACAAAGCCTGAGACAGCTGAGGGAAGACAGCTTCCCAGAGTATGCTCTTCCTCCTGGGATTGTAGGTTGTGCCAGGGACGCCCTGGGGCCTGGACCAAGTGCTGACGAGTTCTCCTCCAAGGGCCCTGTTGTGAGGACAGTCATTTGCTGGGCTCCCTGCCTGGGCAGTATTGCTGGGAAGTGCATGCCTGGGAAAACTGGCTGAGGCGCTCCTAATGCCTTAATGAACAGAACAGATCATTATGCAGGCAAACAGATGATCAGAGGGAAGTGGTAGTAAAAGTGTAAACAGGATCTAATTAATGAATCTGTGACTTGCCTATTCCTGGGAGATGAGTCATGCCTTTTCCCTGCTTATGCACAGAGGGCCCTCACTGACCCCTTGGGCTCTGTGGGTAGAACCCCCCAGTTCCCAGTGCAGCCCAGAAACCGGCTGAGCTGTCTGAAAGCCTGGGGAGAAAGGGTAGACTCAGAGAAAACACTCTGCTCTGGGCAGCGGGGGTGAGGGAAGTAGTCCAGAAACCAAACCCAGTGGCCGAAGGGATTTGTGAAACGGGAGGGCTAGGGTTGCAGAGCTTGGGAGGATCATTTGGTCTCACCCCACTCACTACCTGCCAAGAGACTTGCCTCAGGCCACACAGCCATTCAGTGGCAGAGTTAGAACAAGACTTAACCTCCTGCTTCCTCTGCAGGTTTTCCAGGGCTTTCATGTCAGTCTCCCCCGAGTTCCTCCCCGAGTTCCTCTCCGACATCAGGGAGTTTGACGGTTCTGTTCTCACTGCTCCTTGAAGAAGAATGAAACCCTAAGCCTGGATTAATGTAGAGAGGCCGTGTTACTGGGCCTAGCCTGGCTTTGAATGTGAATGGTGCCCAGACTTTTTCCCCTTTAACTTTACATTTTGAAAAATCTCAAGCTTACAGAAAAATGCAAAGAACAGTATGATGACCAGCCATATATGTCAGATTTACCAGTTGTTAACATTCGCCACACTCGCTCTCTGTGTCCATAGATAAACTCACATACACATGTGTTCTCTGTTTTAACTGATCATTAAAAGTTACAGCATGACATTTGACCTAAATATTTCTGAAACGTATTCTCCTGCAAAACCAAAGTACCATTATCACACCCAAGAAATTTAAACTGACCTAATACTACTCTCTAATACGTCATCCATATTCAAATCTCCCCAGTGGCTCCATGTTGTCCTTTTTTAGCTTTATGTGAAAAAAAATGGTAAAGTGTTGGTTAATTGACTTGGTCAGTGGTTTGTGCGCAGCAGACATTGGAGACATGCTCGTATTTCCTGGGTTTACTGGATTTAGTGTTCACTAAAGTTAAGGGGGGCCATGCAGGAATGAGAAAGGCTGCAGTGCCACCGGGCAGGTGAGCTGAGCCAGGAACTCTGACCTCAGTTTTGGCTTCAAACCAG
Seq C2 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAGATCGGCCGCAATGGGACGCTAACCTTTGGGGATGTGGATACGAGTGATGAAAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development