HsaINT0020753 @ hg19
Intron Retention
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74189401-74192063:-
Coord C1 exon
chr14:74191975-74192063
Coord A exon
chr14:74189551-74191974
Coord C2 exon
chr14:74189401-74189550
Length
2424 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CAGTTTTGACTTCAAACCAGATC
3' ss Score
3.21
Exon sequences
Seq C1 exon
GCTCTGACCAGTGGAAGATGGCCGAGAGGAAGCTGTTCAACAAAGGCATTGCCATCTACAAGAAGGATTTCTTCCTGGTGCAGAAGCTG
Seq A exon
GTGAGCTGGGCTCTGTTTCAGGGCAAATGAGGGCCAGGAGCTGCCTGTGTGACTTTGGGGCTCCCTCTGCCAGTGACCAATCCCTCTTAAAAAGCAGTCAGGTCAATGCTACTGAGTAGCCTCAGAGAGAATTTCCTAAACAATACAAGAAAGAGAAAGATAGGTCTCTTTTCCCTTTTGGTTCTAAGCATCCTTTCCTCACTTCAGGGTAGGGTGGCCAAGCTCTGGGGTCTCAATCCAGAAGGAGGCCTAAGTGGGCATCAGACTTAAAATAGGCAGGAGGAAGATGCGGAGGAGGGTGGCAAGTAGAGGTGAGCCATTCCCCAGAGGAAGATGCAGGGGGAGGGCACCCTGGGGTGAAGGCCACTGAGAGCCAGCAAGTGCCTGCGGAGCTGACCTGGGGGCCTCTGCCCACTTCCTTTGACCCAGAGTTGCCTTCCAGTAACTCAGCTGTTCAAGCCCACATTCCCTAGATTTATCTTGTCCTCTCTCCATATTCTTCTGGAAAAGCAGATGCTTTGCTAATCCAAGGAATTGCATCTTTCCAGCCCTGTCTCACAAAATCTGGGCTGTGGGGAGAGAGAATTGTGTGGACTGCCAAGGGAAAAGAGTTTTTAAAAAGAGCATGCCCTTTCCTCTTGGGATTGTAGATTGTATTGGGAACAGCCCTGGGGACTAGACAAAGTGCTGATGATGAATTCCCCTACAAGGGCCCTGTTGTGAGGAGTCCTTTGCTGTGTTTTAGTAACACGCTATTCCCTGATTGGGCAATACTGACGGGAAGTACACGCCCGTGAAATTCACGGAGGCGCCCCTAATGCCTAATGAAATGAGCAGACCTTTAGTCAGTCAAACAAAGGGTCAGAGAGAATTGACAGTAAATGTGTAAATGGCCTAATTAATACATGTGTGACTTGGCCATTTCTGTGAGATGAAACATGTCTGTTTCCTCCTCAGACACAAAGGGCCCACACTGACCCCTGGCCTCTCTGGACAGGAGCTCCCAGCCCAGCGGTGGCTGAGCAATGTGCGAGCCTGTGTGGTGGTGTCAGAGGAAACAGCCTCTGGGTGTGGGAAAGTTGCCCAAAAACTAAACCCAGTGGCCAAATAGATTTATGCAATGGGAGAGCTAGAATTTCAGAGCTTGAGAGGCAGGTCCCTGGAGATCATCTAGTCTTACTTAACCCCATTTGCTATTTACACATGAAAAAACTGAAATTAGAAAAGTGAGTGACTTGCCTAAGCTCGAATAGCTGTGTGGTAGCAGAGTCAGGAGGAAGACTTAGGCCTTTCGCTTCCTCCTCAGGTTTTCCAGGGCTTTCTTGTGAGTTTCCCTTGAGTTCCTCCCCCGACAGGGGACACTGTGACATTTCTGTATGCTCACTTCTCAGCCACTGCTCCCTGGAGAGAAATGAAATTGTTTGCCTGGATTAATGAAAAGCGTCTGTGTTGCCAGGTCAGGGCTGGCTTTGGATGTAGATGGTGCCCAGACCTTTTCCCTCAACTTTTCAGTTTGAAAAATTTCAAACTTAGAGGAAAATGGAAAGAACAGTAGAATGAACACCCATCCACCCCGGACTTAGATTTAGCAATCGTTAACATTGGCTATATTTGCTTTCTCTTTCTCTATGTCTAAACATAGACACACACATATACAGCTCTCTCTTGTTCTCTGATTCAGCTAATCATTAAAAGTAAGTTACAGTCATCCTGTCACATGACTAAAACCTTTCAGCACGTATCTCCTAAAAACCAAGATATTCTACAAAACCACAGTACCATTAGCACGCCCACGAAATTTAACCTGATAAAATAATTCAGGCCAGGCGAGGTAGCTCACGCCTGTGATTCCAGCACTTTGGGAGGCAGAGGCAGACGGATCACTCCTGAGGCCAGGAGTTTGAGACCAGGCTGGCCAACATGGCAAAACCCCATGTCTACTAAAAATATTTAAAAAAAACTAGCTGGTTGTGGTGGCACACACCTGTAATCCCAGCTACTCAGGAAGCTGAGGCACGAGAATTATTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAAATCGCGTCACTGCACTCCAGCCTGAGTGACAGAGCGAGACTCTGTCTCCAAAAAAAAGAAAAAAAAATACAGTAATGCCCTCTGATATGCAATCCATATTGCCATCTCCCGAGTGGTTCCGACATTGTCCTTTATAGCTTTTTTTATTTATTTACTTATTTTAAATAGTGCTGAAGCATTGATTAATTGATCAGTGGTTTGTTGCAGAGCAGGCATTGGAAAAATGCTTGTATTGCCTGGGTTGGCTGGGTTTCATTTTGGCTTGAAGTTAAGGGAAAGATGCAGGGACGAGAAAGGCTGGATTCTCCACAGGCAGATGAGCCAAACCAGAGGGTTCTGACCTCAGTTTTGACTTCAAACCAG
Seq C2 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAAATCGGCCGCAATGGGACTCTAACCTTTGGGGATGTGGATACGAGCGATGAGAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-C14orf43:NM_001043318:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.460
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)