BtaINT0056489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17142466-17145423:+
Coord C1 exon
chr26:17142466-17142582
Coord A exon
chr26:17142583-17145285
Coord C2 exon
chr26:17145286-17145423
Length
2703 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTCCTCACTTTGCTTCCAGGTG
3' ss Score
12.24
Exon sequences
Seq C1 exon
GCATTTTCAGCTTTTTACTATGTGATGGAGTTTTTAAACCTTACATCAGAGGAATCAGTATCTGTGGAACAGTTGACTGAGAAGTTGGAAGAGTTCTGCGCTCAGCGTTGGGAAGAG
Seq A exon
GTAAGCAACTGGAAACAGCAGCTGTTACCATTGTTACCATTTCCCTGTGCGTCTGCTCTTCAGGTTGTACTAATGTGACCAAGATCCAACACACATGTTAGAGAGGCCCAGATGGCACACTCAGTTAGGAATAAACTCACCGGCATTCCATGATAACTGGCCATACAATGGATTAAACAAAAAAGGTCTTAATGATTTTCACCTAATTTGAAGTGTGGCAATAGGCAGTTGCTGGCATGGGTCCAATAGCTTGACTATCTTCAATCATTCTTCGATCATTCTTCGGCTGCTTTCCTCATGGAAATAAGGTTTAGCTTCAGTGATCGCATCCAGATACATCAGTTCCTTTTTACAGGAAAGCAAAAGCTAGCCCAGAAGCTCCTTAGTAGTCTTTTCTCTTACATCTCATTGGCCACGGCTGGCTGAGAAAGCAGGATGTGGGATTTTACGACTGGCTTTGAGCCCTAGATCCACCACGAGCTACTTCCTGGAGCTGAGCACATTGTCTTCTACTACTTCCCTTAACCCCCGAGGAAGACAGGCAGTTCACAGAATCTGCCACAGACACCACTGTGGTCAGACCATTTTTCCATCAAACAGGTTCAATATATATCCTGCTTATGACAGAAGCACAAGTTTTCTTCTGGTCTGAGGCACTGAGTCATTCAAGATCCAGTGCCACCTGATGAAAATTTCCAGGGACGCAAGAGAAAGATATGGAATTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGACTTTATGCGACCCCATGAATCGCAGCACGCCAGGCTTCCTTGTCCATCACCAGCTCCCAGAGTTCACACAAACTCATGTCCATCTAGTTGGAGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCTCAGCATTAAGGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGCCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGACCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAATTCAAAAGCATTAATTCTTCAGTGCTCAGCTTTCTTCACAGTCCAACTATGAGACCACTGGAAAAACCATAGCCTCTACTAGACGGACATTACTTTGTTGGCAAAGTAACGTCTCTACTTTTCAATATGCTATCTAGGTTGGTCATAAGTTTCCTTCTAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGACACTGTTTCTACTGTTTCCCCATCTATTTCCCATGAAGTGATAGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTTACCTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATACTCTGTTCTAAAAATAAACAGATCATCTAGGAGTGGCCAAAAACAGCAGCTGTTTTAAGTCGACACGGTTGCAAAATGCATGGTGCTTTCATTCTGAAGATATGTGATTATTTGAAAATGGATGCTATTCTCTTGGGCACTGACAACCGAGGAAGGAAGATTGTACAAGAGCCTGGACATTTGAAGGTTGTGCAAGAGCCTGGACATTTGGAATTTTCTCTTAAGTATTTTGTCTGAGTTGGACATGAAGGAGGTATTCAGGGCTTTCAGAAAGAGCAGATCAGATATGCCTCAGCCCTTTCCAAGAGGGGAGGCTTTTTGCAGCTGCTGGTGATCTGTGGAGAAAGAGGAACATCTTGGATTCTTGAGCAAAATGCTTCCTGAACTGGGTTCCAGGGCAGTGTTTGTCGAACGTAACTGTGCCAACTCACTGGAAAAGACCCTGATGCTAGGAAAGATTGAGGGCAGGAGGAGAAGGGGAGAAAGAGGTTGAGATGGTTGGATGGCATCACTGACTCCATGGAAATAAGTCTGAGCAAACTGTGGGAGATAGTGGAGAACAGAGGAGCCTGGCGTGCTGCAGTCCACGGGGTTGCAGAGTCAGACACGACTTAGTGCCTGAACAACAACAAGGGCAAGAGGCTGAGACGGTGTGGATAGAGTCAGGACTCCAACCCTAGTTCTTTTGATTCTACACGTTGAAATGTCTTAACAAAGATCAAATTTTCCCCACACTTAAAGATCTGTAAAATGAAAATACAGACACTATATTTATTGAATAAATGTGTGTATAAGTGGACAAGCTCATTAAACAAAAATTAATGATTTCTTTCATGTAACAGTTTTTCAGTTTTGAATATATGTGGAAAATGTTTCACAAGGGATGAAAAAATATAGTAAAATTCAGTGTTGTTGAACCTATTAGACCGCAGAAACTAGATTTTTTTTTTTCCTGCTGGAGCACTTATTAATGTGTCATAGCCTGTGGAGGAAAAGATCCCTTAACAGACCCTGAAGTATGAAGCCCTGCACCCATGGAAGGCATGCAGCGCCATTCCCAAAGCCCTCTGCAGAGGCCAACCCTCAGGCCCATGTGAGCTGGGGCTTTCTATTCCCTTGATCAGCTCAGTAGGGAACATGGCGGCTGTGGAGAAGGGCCTGTTGTACAAGCATCATGTTTTCCTCACTTTGCTTCCAG
Seq C2 exon
GTGCAGAAGAATTTTGGTGAAGTGAAGGAGAAATACCTGAGTGAATACTGCTTTTCTGGCACCTACATCCTGGTTCTCCTCCTGAATGGCTACCATTTTACAGCTGAGTCCTGGAAAAATATTCACTTCATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589:ENSBTAT00000047864:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]