Special

HsaINT0056485 @ hg38

Intron Retention

Gene
NA
Description
NA
Coordinates
chr10:95860548-95864861:+
Coord C1 exon
chr10:95860548-95860582
Coord A exon
chr10:95860583-95864723
Coord C2 exon
chr10:95864724-95864861
Length
4141 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCCCCTCACTTCACTTCTAGATA
3' ss Score
10.63
Exon sequences
Seq C1 exon
TGATGAAAAAGTTCTGTGCTCAGCCTTGGGAGGAG
Seq A exon
GTAAGTGACTAGGCACAGCAGCTCTAACAGCATGAGTGCCCTGTGTCGTTGCTGATGCAGAGGATGTGAGTCTGCTCTGAAACTCCTGCTGGTTTGACCAAGATCCAGCAAATGTGTTAGAGAAGACCAGATGGTGGACTCAGGAATGAATTTATCAGCATTCCTTGATAACTTGACATCCAGTGGCTTAAATAAGATCTTATTTTTTTCTCACCTAATACAAAGTCTGGCAGTAGGCAGCTGCTGGCATGGGGTCAGCAGCTCTGCTCTATCTCAGCCATTGCTTCTTCAGCTCTGCTGTTGTGCCTGTTTCTTCATGGACACAAGATGGTGGCTGTGGCTTCAGGCATCACAGCCATGTTCAGAAAGGTCAGAAAAGGGGTCGAACCAGATACATCTGTTCCTTTTTACAGGAAAGCAAAAGCTATCCCAGACTCAGCAGTCTTCCCCTTATATCTCAATGGCCAGGATTGACTGGGAAAACCAGGTGCAGAATTTTGTGACCAGCTTAGAGCTTAGACCTATAATGAGCCACTGCCTCGAGCTGGGCACATTGTGGCCCACTCTCCTCCTTCAGTCCCCAAATCAGAGTTCTGTTAGCAAGAAAGCAGGCAATTTGCAGAGTCTGACACAGACACAATTGTGGTAAAATCCTCTCCATTTCCCAGGTCCAAGATATCTCCTACTTATTCATAAACTTGAAGCACAATTTTTTTCTTATCAGAGGCACTGAGCCATTCAACATCCAGTGCCACAAGATGAAAATCCAGGGATGAGAGGTATGGAATCCACTCCGATTATAAAAGACATAGCTCAAAACAGCAGCTGTACTTAAGTTGACAGTTGCAAAAGTGAATGGTGTTTTCATTCTTAAGAAATACTATTAATTAAAAATAGATGCTTATCCCTGACTGCACTGACAAGGGGGAAGAAAGGCTGAGCAAGAGCCTGGAAGCTTGCCATTCTCTCCAGGTATTTTGTCTAGAACATGAAAGAAATGTGGTCAGGGCCTTCATCAAGAGTTGCTCAAATATGTCTCAGCATTTTACAAAATGCTTAGCGGTGGTTTTTTGCATCTGGCGGTGATCTGTGGAGGAAGATAAGCATGTTAGAGTGGAGGCAATTTGAGACCAGGCCTACATGTGGCTGCTGAGGAAGCAGATTTAGGCTGCTCTTTGAAAAAAAATTACTTCTGGTTTAGATTAAAAGTTCTCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAGGACTCCATCTCAAAAATTAAAAAAAAAAAAAAAGTTCTGTCAGGTTTCCTCTCTTATCCACATCTCATGTTTTACTTCATAAGACTATGTTAGGCTGGGAATGCTTATATTTAGACCTGTAGTTCTGCTCAGGTAAGTCATGTGGGGAGTTGTTCAGAGGCCCTGGAAGTAAGCTAAGAAGGGCCTGCATTTGGGAGAATTCCTGAAGCATTTGGGGAAGGGGTTGCAGGGTTAGACCCCTGTCTTCACCCAGAGCCTACAGCATTGAGGTGGATGTTATGACCCAGGGTTCACTTTCCCAAGCTGCATCGTCCACCCAGGTAGAAAGCATAGTTTTGTCAAGTACATTGTTAGAAGGTGACTCTTTCTTCTTTCCCTCCTAACTTCATCATGGACTGCTACTCCAGTATGGCTTGTGTTTGGGAATGTTCCTCCTAAACACCTTTGGTAGAGAGATAATTAACAATGTTTAAGCATGTACTATGTGTTGACAGTGGTGGACATTTGCTTGCTGTGCTTTATGCATATCCTATCATGCTGCCTTCCCCTGCTTTGGCAAGGGAAATAAAATGCAAACCACACCTGCTGACACTCAGTCAGGTACCTGAAGCCATTGGGTCTCTGAAGTGGAGGGACCAGGAGAGTGAGTGGAAGGGAGACTCCATGGTTGTCTTCTGGCAGCTTCATTAGAGGGCTAGTAGAATCTTTCAGCAGCCAGAACACAGCCAATTTTCTACTCTGAAAATCTGGTCATCCAAGATCTGGTCAGCCCAAGTGAACAATGTGATCAGATTCTATGTGTACTGATGACCAGTTATATTTCAGTGTACTCTGGATCCTCACATTCAGCCTCATGAATATTTAGCCTTTCTAGGGAAAGGCATCCCATTCTTGAAGATCCATCAATGCCCCTTTATGTGGAGGGCAGAAAGAGGATATCCATGAAGAGAAAAGAACCTCATCATGTTCCACTGCCCTGGGAATAGAAAGGAGAGAAGAGAGAGGGGAAGGTGGGAGAGAGAGGAGAGAGGAGAGTAGACTTCCCCTCCCAATTTGGAGAGCACATAGTGATCCACCCACAGGCATGAGCATGATCAATTCTGGATTGATGAAGAAGGTGGATGCCTTTTTGGCTTCTATATTTTTGGCTACTATCATAACCTTCAGGAGGCCAGACTGCATAGCCAATGTACAGATTTCCAGAAGGAGGAGGGGAATAGGAGTATTAAAGAATTCAGGGAAATTAGGCCAAAATGGCATCTCCCAGCCCCCCACAAGGGATAGGCCAGCCTTCAAGGACCTACAGGGGCTCAGCACTTTCAAGTTGGACCTAAGTAGATTCTTGGGATTTTGTGTCCCATAGGCATCCTTCAATTGACAGGCCCAAGACTACTTCAATAGGGGAGGAGGTCTTTTCACAAAGGGAAAGCAGAATGCAGTGACTGAAAGGAAGGGGTAGGAACCTGGACAGGCAATGCCAACTGATGTCCACACCAAGGTCTCAAGAGGATGTCACATGCAGAGGAATCAATCAAAGGATAATTTCCAGAACTGTGCTGAAAAGACAAGCTCCAAGCTGGGTCATTCTGAGAATTTCATCAGAGCAAGACAAGGCAGTCTAGTTATGGACTTATCCTTCCAGAAACTGGGGACAGGCAAGAACCAAGTGAGAAACAGACCCCAGCCAGCGGTTAGGATTTGCATATGGGTTAGGACCCACGGAAGGGAGAGAAATCTGGGAAAAGAGGGGTGTGGTTTAGGCATCAAGGAGATACTACATATAAAACATCTGGCATAGTTCCAGATGGTACATGATGCATGCATAACAAATGTTCTCTCTCTGCCGAGGGTATCCAGGAGGGAATGCCTATCTGAAGGGCTGAGGAATGGGGCAGCAGACAGAAGTCCAGGCTGAACTAGAGAGGTCCTGGCCTGTTGTCCTCAAATTGAGGGCAGGAGAGTTGCAGAGCAGGCTGTGGGTATCTGGGTGTATATTCACAACAGCTAGGCTAGGTAAGGGCAAGGGATGGCAAGCAGCTCTTAATATTTTTAGTAGGGAGTAGGATGAGTAAACATAGGAAGGACTCAAGGAAACAACCACTTTGCATGACTCAGATGCAAAAAAAGACATTAAGACAGAAGATAGAAGGTGAGATGTTGGCAGTGCTAGCAGTCCTCAGCAAAATGCTGCCTAAACTGTGTCCACAGCTGTGTTTCTCAAACTTTACTGTGCACGTGAATCACCTGGGAATCATATTGGGATGCAGATTCTGAATTGGTAGTTTTAAGGTGAGGACTAACCAGCTCCCAAGTGATGCTGATGCTGCCAGTCCAGGGACTAAAGTGAGTGGTAAGGCTTTTTATGGCTGTGGGCCAAAGGCTCTGGTCAAGAGCATATAGAAAACTCAGATTAAACAAAGTCTAGGGCATGAACAGAGGTACTGAAATTTAGTGTTTCAGAACCTACTAGACCACAGGAACTACTTTTTTCCTGGAGGACCTGTTATTATCTCATAGAAGCCTGTGCAGGAAAAGCTTCCTTAAGAGACCCTAAACTATAAAACCCTGCTCCCACTGAAGGAGTGCAGCACCACCCCCAAAACCCTCTGGAAGAGGCCAACCTTCAGGTGCACTGGAGCTGGGGCTTTCCCCTCTCTTCATCAGGGCTAGTAGAGAAAAAGAGGGCCACAGAGAGGTGCCTATCATACGAGTATGATCTCCCCCTCACTTCACTTCTAG
Seq C2 exon
ATAAAAACATCTTACGCTGGAGTAAAGGAGAAGTACCTGAGTGAATACTGCTTTTCTGGTACCTACATTCTCTCCCTCCTTCTGCAAGGCTATCATTTCACAGCTGATTCCTGGGAGCACATCCATTTCATTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000270099:ENST00000491114:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0115012=GDA1_CD39=PU(17.5=91.7)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(73.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development