GgaINT0043438 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21576732-21577193:+
Coord C1 exon
chr6:21576732-21576848
Coord A exon
chr6:21576849-21577055
Coord C2 exon
chr6:21577056-21577193
Length
207 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACTTCTCCCTCCTTTCCTAGGTG
3' ss Score
12.84
Exon sequences
Seq C1 exon
GCCTTTTCTGCTTTCTACTTTGTGATGAACTTTTTGAACCTGACAAGTGATGACCCCTTCACCTTGGACGAAGTGGCCAGTGCTATTAAGAAATTCTGCGCCCGACCTTGGCATGAG
Seq A exon
GTGAGCAATGCTGTTTCTCTGCAGTGGGGCAGAGTGCCCAAGTCTCAAGTGTTGCTGATGCTTCTCAGTAGGATGCATAGCTGGGGGGTAATTTCCAAGTCAGGCATGGGAAGAATTCCCTCAGCACCTGCAGTGAATATTCAAGTGCAAGCTGGAGCTGCAGGAACCTGGGTTTAGCAGCCCAGTGACTTCTCCCTCCTTTCCTAG
Seq C2 exon
GTGAAGCTACAGTATCATCAAATAAAAGAAAAGTACCTGAGTGAATATTGCTTTTCTGGAGCCTACATCCTCTCCCTACTGGAAAATGGCTATGAATTCACTACAGAAAACTGGAAAAGGATCCACTTCCTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTCTGCTTTCTACTTTGTGA
R:
AGTGGATCCTTTTCCAGTTTTCTGT
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]