BtaINT0056494 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106186108-106186574:+
Coord C1 exon
chr11:106186108-106186267
Coord A exon
chr11:106186268-106186346
Coord C2 exon
chr11:106186347-106186574
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CCAACGTCTACTTCCCACAGTAC
3' ss Score
5.78
Exon sequences
Seq C1 exon
CCTGACCAGTCCAGAGGCTTCAGCCAATGTGCTAGCTGCCGTGACGCAGACGCTGACCCAGTACCCCTTTGACTTCCGCGGTGCCCGCATCCTCTCAGGCCAGGATGAGGGTGTGTTTGGCTGGGTGACCGCCAACTACTTGCTGGAAAACTTCATCAAG
Seq A exon
GTGGGCCCGGTGGCCAGCCCGATGAGCCAGGGGTGTGGGCACCCACCCACTGGCTGACCCCAACGTCTACTTCCCACAG
Seq C2 exon
TACGGCTGGGTGGGCCGGTGGTTCCGGCCAAGGAAGGGGACGCTGGGGGCCATGGACCTGGGGGGAGCCTCCACACAGATCACCTTCGAGACGACCAGCCCCACGGAGGATCCGGCCAATGAGGTTCAGCTCCGGCTCTACGGCCAGCGCTACCGAGTGTATACTCACAGCTTCCTCTGCTACGGCCGTGACCAGGTTCTGCGGAGGCTGCTAGCCCGTGCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCTCAGGCCAGGATGA
R:
TGGTCGTCTCGAAGGTGATCT
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development