RnoINT0055166 @ rn6
Intron Retention
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2620209-2620681:+
Coord C1 exon
chr3:2620209-2620368
Coord A exon
chr3:2620369-2620453
Coord C2 exon
chr3:2620454-2620681
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GCAAACTCTATTCTCCACAGTAT
3' ss Score
5.47
Exon sequences
Seq C1 exon
CCTGACCAGCCCAGAGGCCACAGCCAGGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
Seq A exon
GTGGGCCCTGCAGCCAGCCCAAAGGACCTGGTGCCCTGCTGGTCTTGCTCACCCACAGTCTAAGTGCAAACTCTATTCTCCACAG
Seq C2 exon
TATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGACCTTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACGAGGTTCATTTGCGACTCTATGGCCAGCATTACCGCGTTTACACACATAGCTTCCTCTGCTATGGCCGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102:ENSRNOT00000017829:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACTACCTGCTGGAGAAC
R:
GCTGGCCATAGAGTCGCAAAT
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]