GgaINT0124638 @ galGal4
Intron Retention
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:920304-921213:-
Coord C1 exon
chr17:921054-921213
Coord A exon
chr17:920535-921053
Coord C2 exon
chr17:920304-920534
Length
519 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TGACTGCCTTATGGGGCCAGTTT
3' ss Score
3.83
Exon sequences
Seq C1 exon
GGAGCAGAACAGCACAAAAGCTGAGCAGGTCTTTGCTGAGGTCAGCAAGGCCATTCGTGAGTTCCCTGTGGACTTCCGCGGAGCTCAGATCCTCACCGGGAATGAGGAGGGCTCCTTCGGCTGGATCACCATCAACTACCTGCTGGAGACACTTATCAAG
Seq A exon
GTGTGGGCCAGAGGAAAGGGCATGGGGGCCTGAGGATATGCATCGCGTATGTATCTTCCTGCCTGAGTAAAGACCAGATTTCTTTATTCCCACTGGGGAGTGAAATGTCATTTTAGAGTGATAGTCACCCAAACAAATGTAGCATGTTGTTGTGAACTGCACCTTTGACTTTACAGGTGTGATTAAGAGAGTCAAGGGCAGGAGGACCTTTGTGTCCAGCTCATCCTGGTCCTGTGCTCTCTGTTTATGTATGGGTTGATTTTGGTATCATGGGGATGCAGCAGTATCAGAGTCCAGAACATTACACTTTTCCTCCTCAAAGTCCCTGGATCCAAGCTGATGTGCAGCAGCCAAGGACCCAAATGTCAGCACTACACAGAGATCTATGTGGGTTGAGGAAGATGTGGGCAACAAGGGGTTAAACAGGAACATAGGATGTGGGAGGTCTCCCCGGGGCTTTTGAGATCACAGAACCTTTAGGGAAGGGACAGACTAACACTGACTGCCTTATGGGGCCAG
Seq C2 exon
TTTTCCTTCGCAGGAAAATGGGAACATCCACAAAACACTGAAGTCCTGGGAGCTCTGGACCTTGGAGGAGCCTCAACACAAATTACCTTCCAGCCTGGAGTCACCATTGAAGACAAAAACACATCTGTACTCTTCAGGCTGTATGGCACCAACTACTCACTCTACACCCACAGCTACCTGTGCTATGGGCAGATACAGGCCTCGAAGAGGCTGATGGCAGCTCTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014516:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCTTTGCTGAGGTCAG
R:
TCTTCGAGGCCTGTATCTGCC
Band lengths:
344-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]