HsaINT0056562 @ hg19
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140330973-140331480:-
Coord C1 exon
chr9:140331321-140331480
Coord A exon
chr9:140331204-140331320
Coord C2 exon
chr9:140330973-140331203
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
GTGGCCCCTTCTGTGCCCAGTAC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAGCAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
Seq A exon
GTGCCACAGGCTGCCTGAGGGCGGGGGCTGGTCTGCGAGGGGCTGGTGTCTGGGGCTGGCTGACCGGGACGGGGTCCGGGTGGCTGCTCCCAGCTGAGTGGCCCCTTCTGTGCCCAG
Seq C2 exon
TACTCCTTCACTGGAGAATGGATCCAGCCTCCGGAGGAGATGCTGGTGGGTGCCCTGGACATGGGAGGGGCCTCCACCCAGATCACGTTCGTGCCTGGGGGCCCCATCTTGGACAAGAGCACCCAGGCCGATTTTCGCCTCTACGGCTCCGACTACAGCGTCTACACTCACAGCTACCTGTGCTTTGGACGGGACCAGATGCTGAGCAGGCTCCTCGTGGGGCTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_001033113:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTGCAGCAGTCACCCAG
R:
GTGCTCTTGTCCAAGATGGGG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)