HsaINT1012596 @ hg38
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137436521-137437028:-
Coord C1 exon
chr9:137436869-137437028
Coord A exon
chr9:137436752-137436868
Coord C2 exon
chr9:137436521-137436751
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
GTGGCCCCTTCTGTGCCCAGTAC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAGCAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
Seq A exon
GTGCCACAGGCTGCCTGAGGGCGGGGGCTGGTCTGCGAGGGGCTGGTGTCTGGGGCTGGCTGACCGGGACGGGGTCCGGGTGGCTGCTCCCAGCTGAGTGGCCCCTTCTGTGCCCAG
Seq C2 exon
TACTCCTTCACTGGAGAATGGATCCAGCCTCCGGAGGAGATGCTGGTGGGTGCCCTGGACATGGGAGGGGCCTCCACCCAGATCACGTTCGTGCCTGGGGGCCCCATCTTGGACAAGAGCACCCAGGCCGATTTTCGCCTCTACGGCTCCGACTACAGCGTCTACACTCACAGCTACCTGTGCTTTGGACGGGACCAGATGCTGAGCAGGCTCCTCGTGGGGCTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833:ENST00000344119:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTGCAGCAGTCACCCAG
R:
GTGCTCTTGTCCAAGATGGGG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains