BtaINT0056486 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17124623-17125957:+
Coord C1 exon
chr26:17124623-17124782
Coord A exon
chr26:17124783-17125717
Coord C2 exon
chr26:17125718-17125957
Length
935 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GTGACTGTACTCTCTTTCAGAAA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GATGGAAAATAAACAGATGGCAGACAAGATCCTGGCTGCAGTTGCAAGCAGCATCAGCAAGTACCCCTTTGACTTCCAAGGTGCCAGAATCATCAGTGGCCAGGAGGAAGGTGCCTATGGCTGGATTACTGTCAACTATTTGCTGGGCAAATTCACTCAG
Seq A exon
GTGATTATCTCACAGCACCCAGGGAGGTGGCTCCATGGGGGTCAATGCCATTGATATATCTTGGAAAGACCTGGATCACTAAGCAGAATGAATGATGGATAAATGGGCAAATTAACTTCCTCTCATATTTGCAAGGGTCACCAGAGGTATAGATCTCTTACAACTACTCTTACTGTTGGAGAATAAGGGAGCCGTATCTTCACGTTACAGAGACAAAGAAAAAATTAAAAAAATAGAAATGTAGAAAAATCGGTCTTACCGGGTGGCACTAGTGGTAAAGAACCCGCCTGCCACTGCAGGAGACATAAGAGACATGGGCTCAATCCCAGGGTCTGAAAGATCCCATGGAGGAGGGCATGGCAACCCACTCAAGTCTTCTTCTGGAGAATCCCATGGACGAGGAGCCTAGTGGGCTACAGTCCATAGGGTTGCAGAGTTGGACAGGACTGAAGCGACTTTGTATGCACACATGCACACATAGAAAAATTAAAAATCTATCATTGAAAATAAAGATATCTGTTATTTTCCCAATGCTATGTGTCTTGTGCTATATGCAAAGCATTTTTCATATACCATTTGATTTAATCTTCAGAATACTTATGGGAGATGTTCTCTCATTGAAAAGCCACAAATGGAGGCCTAGAGAAGGTAATTGTTCTGCCTAAGGTCCCATGGCTAATGAGCAAATGAGTGGGGATTTGAATTTTCGTCTTTCTGGCCCCTGGTTGTAAACTGGCCCTGTATTGCTACAATCTGAGCTGAGTCTCTGAAGCCCCTCTTTTCTTGCTGTTGATTTGATGCATACTCAGGAACCTCTGGTAAGCTTGGTGTCACCCTTATGCTCCTATGCCTTAGGAAGTCCTTGAGTCCAAGAAATCCTATGAAAAGGGAGATGCACAGAGGCTTCTACAGCTGGTGACTGTACTCTCTTTCAG
Seq C2 exon
AAATTGAGTTGGTTTAACCTGAAGCCAAGCAAAGACGACACTCAGGAAACCTATGGAGCTTTAGACCTTGGGGGAGCCTCTACACAAATCACTTTTGTGCCCCAAAATGAAACGACCGAGTCTCCAAACAACAACCTGTACTTCCGCCTCTATGGCAAGAACTACAGTGTATACACACACAGCTTCCTGTGCTATGGGAAGGACCAAGCACTTTTGCAGAAACTGGCCCTGGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589:ENSBTAT00000047864:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAAGATCCTGGCTGCAG
R:
GCTTGGTCCTTCCCATAGCAC
Band lengths:
349-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]