HsaINT0056483 @ hg19
Intron Retention
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97604233-97605353:+
Coord C1 exon
chr10:97604233-97604392
Coord A exon
chr10:97604393-97605113
Coord C2 exon
chr10:97605114-97605353
Length
721 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
GTAACTGTACTGTCTTTCAGAAA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GATGGAAAGTGAAGAGTTGGCAGACAGGGTTCTGGATGTGGTGGAGAGGAGCCTCAGCAACTACCCCTTTGACTTCCAGGGTGCCAGGATCATTACTGGCCAAGAGGAAGGTGCCTATGGCTGGATTACTATCAACTATCTGCTGGGCAAATTCAGTCAG
Seq A exon
GTGAATATCTCACAGCATCCATGGAGGTGGCTCTCTGGAGGCCAATGCCATTGCTATCTCAGGCAGTACTTGGGTCGCTAGCCAGAATGAATGAATGAATGATAGATGGATGGATGGATGGATGACTGGATGAATGAATTTACTCTCACATTTGTAAGGGTCACCAGAGGTATAATTCTCTTACAAGACCTTCTACTATTGGGAGAATAAGGACATGTCTTTACCTTAGGGAGGCATAAAGGAAATTAAAAATTTATCATTAAAAATTAGAATAGCTAACATTTGCCTTCTGCTATGTGTCTCCCGCTGTGCTCAGCACTTTTCATGTTTTCTCTGATTTTATCCTTAGAACAACACTATGAGGTACTACATCATCCCCATTTTAGAGCCCCATATCGATGCCTAGAGAGGGTAATTAGTCTGCCCATGGCTGTACAGCTAACAAGCGACTGAGTGAGAATTTGAACTTGAATGTGTCTGGCCTCAGACCTCTTGTTTTTAAACACCAGTTACACTGCTTCTATGTCCGGCAGTCTGAGCTATGTCTTTGAAGCCCCTCTTTTCTTGCTGATAATCTGTTGTAGATCAGGAGCCTCTAGTGAGCTTTGCCTCACCTTTATGCCCCTGTTTCTTTGCCTTAGGAAATCCCTGACTCCAATAGATACTATGAAAAGCAGGGTGTCCAGAGACTTCTAGCACTGGTAACTGTACTGTCTTTCAG
Seq C2 exon
AAAACAAGGTGGTTCAGCATAGTCCCATATGAAACCAATAATCAGGAAACCTTTGGAGCTTTGGACCTTGGGGGAGCCTCTACACAAGTCACTTTTGTACCCCAAAACCAGACTATCGAGTCCCCAGATAATGCTCTGCAATTTCGCCTCTATGGCAAGGACTACAATGTCTACACACATAGCTTCTTGTGCTATGGGAAGGATCAGGCACTCTGGCAGAAACTGGCCAAGGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-ENTPD1:NM_001776:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(15.6=98.1)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTGGCAGACAGGGTTCT
R:
TGCCTGATCCTTCCCATAGCA
Band lengths:
358-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)